Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02479 GTAATCTGGGGATTAGGTCCTGTGTCTCCAATAACAAATGTGCTTCCTCTGTCTCTGGTGCTTCTTGTCTCTCTTATCAAGGAAGCTTTTGAGGACTGGGGCAAGGAAATTACAAAGAGATTTCAAAATGACATGTCCATAAACAATAATACTATAGAAGTTTTGCAAGATCAAAAGTGGGAGCCTATACCCTGGAAAAAGTTGCAGGTTGGAGACATTGTCAAGGTTAAACAGGATGGATTCTTTCCTGCAGATCTGCTGTTCTTGGCGAGCACTAATGCAGATGGTGTCTGCTACATCGAGACTGCTAATTTGGATGGGGAGACCAATTTAAAGATTAGGAAAGCATTGGAAAAGACTTGGGATTACGTGACACCGGAGAAGGCATATGAGTTTAAAGGTGAAATTCAATGTGAACAACCAAACAATTCATTGTATACCTTTACTGGAAATCTTATAAGCCAAAAGCAAACATTGCCTCTGAGTCCAAATCAAATTTTGTTGCGGGGTTGCAGTCTCAGGAATACAGAGTATATTGTTGGGGTTGTGATATTTACAGGACATGAAACAAAGGTGATGATGAATACAATGAATGTTCCTTCCAAAAGAAGTACACTAGAGAGGAAGCTTGACAAGCTCATATTAACTCTATTTGCAACTCTTTTCATGATGTGTTTCATTGGAGCCATTGGAAGAACTTCAAATTTGAATGAAGAACTTGGGCAGGTGGAATACATTTTCTCTGATAAAACTGGAACTCTAACAAGAAATTTAATGGAGTTCTTCAAGTGTTCGATTGGAGCAGAGGTCTATGGAAATGGTGTGACTGAAATTGAGAGAGGATTAGCAGAGCGCAATGGCATGAAGATTGAGGAAAATAGTTCTTCCAAAGTAATGCAAGAGAGGGGTTTTAATTTTGATGACGCAAGGCTTATGAGAGGAGCTTGGAGGAATGAGCCTAATCCTGATGTCTGCAAGGAATTCTTCAGATGCCTTGCTATATGCCATACTGTACTGCCTGAGGGTGATGAGTCCCCTGAAAAGATCAAATATCAAGCTGCATCACCTGATGAGGCTGCTTTGGTTATTGCTGCAAAACACTTTGGTTTCTTTTTCTACAGACGCACACCTACAATGATATATGTTCGTGAATCTCATGTTGAGAAAATGGGCAAAATTCAAGACGTGTCTTATGAGATTTTAAATGTTCTTGAGTTTAATAGTACAAGGAAGCGTCAGTCTGTTGTATGCCGTTATCCTGATGGAAGGCTTGTACTATACTGTAAGGGTGCTGATACTGTAATCTATGAGAGACTGGCTGATGATAGTAGTAATAATATCAAGAAAATCACCAGGGAGCATTTGGAACAATTTGGATCTGCTGGATTACGCACACTATGCCTAGCCTACAAAGAATTGCATCCTGATGTTTATGAAAGCTGGAATGAGAAGTTTATCCAGGCCAAGTCTTCTCTAAATGATCGAGAAAAGAAATTGGATGAGGTGGCAGAACTTATCGAAAATGATCTCATTTTAATTGGTAGCACAGCCATAGAAGACAAACTTCAAGAGGGAGTACCAGCTTGCATAGAGACTCTTCAAAGAGCTGGTATAAAAATTTGGGTTCTTACAGGGGACAAGATTGAAACAGCGATTAACATAGCCTATGCATGCAACTTGATAAACAATGAGATGAAGCAATTTGTGATTAGTTCAGAAACTGATGCAATTAGAGAAGTTGAAGACAGGGGTGACCAAGTAGAAATTGCAAGGTTTATCAAAGACGAAGTGAAAAAAGAGCTGAAGAAATGCCTTGAGGAAGCACAGAGCTCTTTTCATTCCCTATCTGGACCAAAATTAGCACTTGTAATTGATGGAAAATGTCTAATGTATGCATTGGATCCAAGTTTAAGAGTGATGCTGCTGAACCTAAGTTTGAATTGTCATTCTGTTGTTTGCTGTCGAGTGTCTCCTTTGCAGAAAGCACAGGTCACGAGTATGGTTAAGAAAGGTGCACAAAAAATAACACTTAGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCACATGTTGGTGTTGGCATAAGTGGGTTGGAGGGAATGCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTCCGTTACCTTGCAGATTTACTTCTTGTTCATGGCCGATGGTCTTATTTGCGAATATGCAAGGTTGTCTTATACTTCTTTTACAAGAATCTCACTTTCACTCTTACTCAGTTTTGGTTTACGTTTCAAACTGGGTTTTCTGGTCAGAGATTCTATGATGATTGGTTTCAGTCATTATATAATGTTATCTTCACAGCACTACCTGTAATCATTGTTGGATTATTTGACAAGGATGTCAGTTCATCTCTATCCAAGAAGTACCCTGAACTATACATGGAGGGAATAAGAAATGTTTTCTTCAAATGGAAAGTTGTGGCAATATGGGCATTCTTTTCTGTATACCAGTCTCTAATATTCTTCTATTTTGTGAGTACAACAAATTTAAGTGCTAAAAACTCAGCAGGCAAGATATTTGGACTCTGGGATGTCAGTACAATGGCCTTCACTTGTGTTGTGATAACCGTCAACTTTCGACTGCTTATGATTTGTAATTCGATCACTAGATGGCACTGCATTAGTGTTGGTGGAAGTATATTAGCCTGGTTTATTTTTATTTTCATATATTCAGGGATTAGCACTCCCTATGATCGTCAGGAGAATATTTATTTTGTCATATATGTCTTGATGACTACGTTCTACTTCTACGTCATGCTACTTCTAGTTCCTGTTGCTGCACTTTTCTGCGACTTTGTTTACCAAGGGATTCAAAGATGGTTCTTCCCCTATGATTATCAGATTATTCAAGAAATGCACAGAGATGAGCTAGATAACACTGGTAGGGCACAGCTGCTGGAGATAGGGAACCAGCTTACGCCAGCTGAGGCAAGGAGTTATGCAATATCTCAACTCCCACGTGAGATATCAAAGCACACCGGTTTTGCTTTTGATTCACCTGGGTATGAATCCTTTTTTGCGGCACAGCTTGGTGTATACGCCCCACCCAAGGCATGGGATGTTGCAAGACGAGCTAGCATGAGATCGAAGCCCAAGACTGGGCACCAGAAGTAA 3156 0.3989 VIWGLGPVSPITNVLPLSLVLLVSLIKEAFEDWGKEITKRFQNDMSINNNTIEVLQDQKWEPIPWKKLQVGDIVKVKQDGFFPADLLFLASTNADGVCYIETANLDGETNLKIRKALEKTWDYVTPEKAYEFKGEIQCEQPNNSLYTFTGNLISQKQTLPLSPNQILLRGCSLRNTEYIVGVVIFTGHETKVMMNTMNVPSKRSTLERKLDKLILTLFATLFMMCFIGAIGRTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGAEVYGNGVTEIERGLAERNGMKIEENSSSKVMQERGFNFDDARLMRGAWRNEPNPDVCKEFFRCLAICHTVLPEGDESPEKIKYQAASPDEAALVIAAKHFGFFFYRRTPTMIYVRESHVEKMGKIQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADTVIYERLADDSSNNIKKITREHLEQFGSAGLRTLCLAYKELHPDVYESWNEKFIQAKSSLNDREKKLDEVAELIENDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFVISSETDAIREVEDRGDQVEIARFIKDEVKKELKKCLEEAQSSFHSLSGPKLALVIDGKCLMYALDPSLRVMLLNLSLNCHSVVCCRVSPLQKAQVTSMVKKGAQKITLSIGDGANDVSMIQAAHVGVGISGLEGMQAVMASDFAIAQFRYLADLLLVHGRWSYLRICKVVLYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSSSLSKKYPELYMEGIRNVFFKWKVVAIWAFFSVYQSLIFFYFVSTTNLSAKNSAGKIFGLWDVSTMAFTCVVITVNFRLLMICNSITRWHCISVGGSILAWFIFIFIYSGISTPYDRQENIYFVIYVLMTTFYFYVMLLLVPVAALFCDFVYQGIQRWFFPYDYQIIQEMHRDELDNTGRAQLLEIGNQLTPAEARSYAISQLPREISKHTGFAFDSPGYESFFAAQLGVYAPPKAWDVARRASMRSKPKTGHQK 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02479 1051 ProSitePatterns E1-E2 ATPases phosphorylation site. 249 255 IPR018303 -
Spst3g02479 1051 Gene3D - 512 719 IPR023214 -
Spst3g02479 1051 SUPERFAMILY Calcium ATPase, transmembrane domain M 8 957 IPR023298 -
Spst3g02479 1051 Gene3D - 376 511 IPR023299 GO:0000166
Spst3g02479 1051 NCBIfam phospholipid-translocating P-type ATPase 230 965 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Spst3g02479 1051 FunFam Phospholipid-transporting ATPase 355 511 - -
Spst3g02479 1051 SUPERFAMILY HAD-like 235 721 IPR036412 -
Spst3g02479 1051 Pfam Cation transport ATPase (P-type) 344 438 - -
Spst3g02479 1051 SFLD C1.7: P-type atpase like 229 730 - -
Spst3g02479 1051 PRINTS P-type cation-transporting ATPase superfamily signature 247 261 - -
Spst3g02479 1051 PRINTS P-type cation-transporting ATPase superfamily signature 679 698 - -
Spst3g02479 1051 CDD P-type_ATPase_APLT_Dnf-like 1 839 - -
Spst3g02479 1051 FunFam Phospholipid-transporting ATPase 512 719 - -
Spst3g02479 1051 FunFam Phospholipid-transporting ATPase 23 197 - -
Spst3g02479 1051 Pfam Phospholipid-translocating P-type ATPase C-terminal 707 957 IPR032630 -
Spst3g02479 1051 Pfam E1-E2 ATPase 48 230 - -
Spst3g02479 1051 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 5 232 - -
Spst3g02479 1051 FunFam Phospholipid-transporting ATPase IC 244 256 - -
Spst3g02479 1051 SFLD p-type atpase 229 730 IPR044492 -
Spst3g02479 1051 Gene3D - 30 197 - -
Spst3g02479 1051 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 253 526 IPR023299 GO:0000166
Spst3g02479 1051 SUPERFAMILY Calcium ATPase, transduction domain A 49 193 IPR008250 -
Spst3g02479 1051 NCBIfam HAD-IC family P-type ATPase 652 758 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02479 Spst-Chr3 72520423 72539734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02479 5 231 Primary Pumps ATPases AT1G59820 81.057 1.32e-122 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02479 K14802 - cave:132177196 1640.17