Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02477 ATGTCCGATTGGGCCACTCCTACACAGCATCCCGAACACATTAAACCCTTGAAACGTGGCAGTACTTCATTGGATATGAGAATCAACGGTCGAGATCTCAGAGAGGAAGAGGCAGGGTATCGATCGTACGGTAGGGAAGAGAGAACCGCTCAAACCTCAGTGGGAACGACTTCGTACGCTGCCACCGAGGTCTGTGTCTGTGGAACAGTTTTGCGGTTCGGGTTTTCATTTATGGATCCGGGCGCGATGATGAACGAGGGTTCCTTTGCGAATAATGACAGCGGCAATACGGCGCCGTATAGCTTGGCGGAGATCTGGCCGTTTCCGCAAGCGATTAATGGCGGCGGAGGATTGGGTCTCCGAAGCCCGCAGTTTGGACATGGACCGGGGCAGTTTGGGGATTTCCCTCCCGGACCCAACCATGGGCTTGGGCCCAGTAACTCCAGAAAGCGGCGCGACTCCGACGACGATTCCGCTAAGGCCGTGTCCACCAGCAATGCCGCGAATGAGAGTGATGGAAAACGTGTTAAAGCAACAGGGAATAGTGATGGTAAAGGTGAAGGAGAAGTCAGTTCAGGAAAGCCTGCGGAGCAAAGCGCAAAGCCTCCTTTGGAAGCTCCTAAGCAAGACTACATTCACGTCCGAGCCAGAAGGGGTCAAGCCACTGATAGCCACAGTCTTGCAGAACGAGCTCGAAGGGAAAAAATCAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATCGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCTCTTCAGCGCCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCGAGACTGAACTCCGGTATTGAAGCCTTTCCTTCTAAGGATTTTGGTCAGCAAGCATTTGATCCCGCAGGCATACCATTCGGATCACAAGCCCCAAGAGAGTATAGCAGAGGCTCTTCACCTGACTGGTTACATATGCAGGTTGGAGGTGGTTTTGAAAGAACAACGTAG 1026 0.5049 MSDWATPTQHPEHIKPLKRGSTSLDMRINGRDLREEEAGYRSYGREERTAQTSVGTTSYAATEVCVCGTVLRFGFSFMDPGAMMNEGSFANNDSGNTAPYSLAEIWPFPQAINGGGGLGLRSPQFGHGPGQFGDFPPGPNHGLGPSNSRKRRDSDDDSAKAVSTSNAANESDGKRVKATGNSDGKGEGEVSSGKPAEQSAKPPLEAPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIEAFPSKDFGQQAFDPAGIPFGSQAPREYSRGSSPDWLHMQVGGGFERTT 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02477 341 MobiDBLite consensus disorder prediction 117 208 - -
Spst3g02477 341 Pfam Helix-loop-helix DNA-binding domain 224 271 IPR011598 GO:0046983
Spst3g02477 341 Gene3D - 217 293 IPR036638 GO:0046983
Spst3g02477 341 SMART finulus 226 276 IPR011598 GO:0046983
Spst3g02477 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 218 287 IPR036638 GO:0046983
Spst3g02477 341 CDD bHLH_AtBPE_like 210 295 - -
Spst3g02477 341 MobiDBLite consensus disorder prediction 1 22 - -
Spst3g02477 341 Coils Coil 267 287 - -
Spst3g02477 341 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 109 311 IPR024097 GO:0006355
Spst3g02477 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 220 270 IPR011598 GO:0046983
Spst3g02477 341 FunFam Basic helix-loop-helix transcription factor 217 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02477 Spst-Chr3 72465386 72468768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02477 78 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 56.134 5.77e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g02477 HLH 3.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02477 - - gmx:100784478 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02477 3 72465386 72468768 Spst3g02477 3 72465386 72468768 ECH
Spst3g02477 3 72465386 72468768 Spst2g01511 2 13847538 13850537 PCT