Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02460 ATGGCTAGTGAGAAGCTTCATGGGAGTTCAAGCATGACACTTCTACTCCAAAGAGAAAGGCTTCCATGCTCCCCTGAGCTTATTCAAACCTTTTGGGTTCAAAACTCTGAACCTTCTTTCCAAGGTTCAAAATCCTTTGTTGATGTTGTGAATGTGACGGAGAGGCCCTTCTTCCGAGGGGTTGAGAAAGAAGAGAACGGTGATGATGAGGATTTTGAGGCACTCCCCCATCAACCCGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGTAACTTCGAGGTGGAAAACAAGCTTGAACCCGAAAGAAAAGTCCAACTTGCAAAGGAACTTGGCATGCAACCAAGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGGTTCAAGACCAAACAGCTAGAAACAGACTATGGCATGTTGAAAGATAGCTATGACATTCTCAAAAGGGACTATGACAATCTCGTTCAAGAGAATCACAAGTTGAAGGAAGAGGTTTATTCTCTCAAGAAGAAAGTGATTCCCGGAGAGAAAGACGGACAGAATTTGGGTAACACCAGCTCTGATGCTGTCAACTCAGAGCATAAAGAGCAGAAGGATTTGATCATAAATAGAGGTTCTGAAAATGGATCCAAGGTGGCACTTCCTGTTATGGTAATAAGCAAACAGGAAGATGCTAATTCAGCTAAAAGTGATGTGCTTGATTCGGAGAGCCCATATTTCACTGATGGAAACCAATCCTCACACTTGGACCCTGCAGATTCCTCTCATGCTTTGGAACAAGACCACTCGGATTTCTCACAAGATGAGGAAGACATTCTCAGCCAAAACATCTTGACCATGCCATTCCAACCAAAGGTTGAAGTTGAATATGTATGCTATGATGAACCACCTGAAAATCCTTGCACTTTCCGTTTCCCAGTGGAAGATCAAACCTTCTGTTTCTGGTCTTGTTAA 969 0.4355 MASEKLHGSSSMTLLLQRERLPCSPELIQTFWVQNSEPSFQGSKSFVDVVNVTERPFFRGVEKEENGDDEDFEALPHQPGKKRRLTSEQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLETDYGMLKDSYDILKRDYDNLVQENHKLKEEVYSLKKKVIPGEKDGQNLGNTSSDAVNSEHKEQKDLIINRGSENGSKVALPVMVISKQEDANSAKSDVLDSESPYFTDGNQSSHLDPADSSHALEQDHSDFSQDEEDILSQNILTMPFQPKVEVEYVCYDEPPENPCTFRFPVEDQTFCFWSC 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02460 322 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 66 245 IPR045224 GO:0003700
Spst3g02460 322 SUPERFAMILY Homeodomain-like 77 147 IPR009057 -
Spst3g02460 322 Pfam Homeobox associated leucine zipper 136 177 IPR003106 GO:0006355|GO:0043565
Spst3g02460 322 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Spst3g02460 322 CDD homeodomain 79 137 IPR001356 GO:0003677
Spst3g02460 322 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Spst3g02460 322 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Spst3g02460 322 MobiDBLite consensus disorder prediction 60 80 - -
Spst3g02460 322 Gene3D - 75 141 - -
Spst3g02460 322 MobiDBLite consensus disorder prediction 180 201 - -
Spst3g02460 322 SMART HOX_1 78 140 IPR001356 GO:0003677
Spst3g02460 322 FunFam Homeobox-leucine zipper protein HAT5 74 138 - -
Spst3g02460 322 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Spst3g02460 322 MobiDBLite consensus disorder prediction 230 273 - -
Spst3g02460 322 Coils Coil 149 176 - -
Spst3g02460 322 MobiDBLite consensus disorder prediction 230 258 - -
Spst3g02460 322 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Spst3g02460 322 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02460 Spst-Chr3 72276232 72277934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02460 31 177 Homeobox Transcription Factor Family AT3G01470 53.333 2.38e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst3g02460 Homeodomain 7.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02460 K09338 - gmx:100804328 506.908