Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02443 ATGGAGCTTGCAACTGTGAAATCTGAACTGAGCCCAAGAAACCATAGATTGCTCATGATAGATGGTAGTGAGGTTATTGCTACTAAGTGTGTCAAAAGGAGGCGAAGAGATTCGTCTATGGCAGTGTTAGATGGCAATGAACAACAAGGTGAAAAGTTAGAAGAACATAAGCAACTTGGTACTGCCACCACAGTGAAGAGAAGTTCAAGGATAAATAGAGAAAGTGACCTTTTGGTTAAATTTATGCTCAAAACAGGAGCTTATAATGATGAAGAAGCCGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACATCGACTTTCACAAATTTTCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGAAAACAGTAACTAAAGAAGAATATCTAGCTTCTTTGAGAAGGAGGAGCAGTGGTTTTTCTAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTTGGCAACAAGTACCTCTACCTTGGGACTTACAGTACACAAGAAGAAGCAGCTCGTGCATATGACATTGCAGCAATTGAGTACAGAGGCATAAATGCTGTGACAAACTTTGACCTGAGCACCTACATCAGATGGCTAAGACCAGGAACACATCCTACTGCTTCTCATGATCAAAAGCCTATCACAGACCCTCAGCCCCTTGCTACCTCTAACTCCATGCAAACAAGAGGGAGCGTTGAGGTATCCAACTCCAACATGCATTCATTCTCCTCAGGTGAATTGGACAGTACCAAGAAGCAAGACTTTTCCAGGTATATGAACCCTCTGAGTCCTTGCAACAAGCCTTCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCATCAGTGTTTAGAGAATTGATGCAGAGAAATCTGAACTCCTCTTGTGAGGAGGCTGAACAAGTTGAATTGAAACACCCACAAAAAGGCAATGATGGAAATGGAGGAATTTATGATAATGACAGCACCAGTAACTCTTACTTTTTCTCTTCTAATATCAACAGATTACCTAACTTGGAGTCATCGGAAGAGAGTTCACTGCCTATGTATCATGGAACTGTACAATCCCTATGGAATAGTTCTTTCCACATGTCCAACTGA 1152 0.4158 MELATVKSELSPRNHRLLMIDGSEVIATKCVKRRRRDSSMAVLDGNEQQGEKLEEHKQLGTATTVKRSSRINRESDLLVKFMLKTGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGTHPTASHDQKPITDPQPLATSNSMQTRGSVEVSNSNMHSFSSGELDSTKKQDFSRYMNPLSPCNKPSSPTALGLLLKSSVFRELMQRNLNSSCEEAEQVELKHPQKGNDGNGGIYDNDSTSNSYFFSSNINRLPNLESSEESSLPMYHGTVQSLWNSSFHMSN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02443 383 ProSiteProfiles AP2/ERF domain profile. 27 115 IPR001471 GO:0003700|GO:0006355
Spst3g02443 383 SUPERFAMILY DNA-binding domain 150 211 IPR016177 GO:0003677
Spst3g02443 383 SMART rav1_2 64 121 IPR001471 GO:0003700|GO:0006355
Spst3g02443 383 SMART rav1_2 151 215 IPR001471 GO:0003700|GO:0006355
Spst3g02443 383 CDD AP2 150 211 IPR001471 GO:0003700|GO:0006355
Spst3g02443 383 ProSiteProfiles AP2/ERF domain profile. 151 209 IPR001471 GO:0003700|GO:0006355
Spst3g02443 383 MobiDBLite consensus disorder prediction 39 66 - -
Spst3g02443 383 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 82 281 - -
Spst3g02443 383 MobiDBLite consensus disorder prediction 226 268 - -
Spst3g02443 383 FunFam AP2-like ethylene-responsive transcription factor 150 211 - -
Spst3g02443 383 SUPERFAMILY DNA-binding domain 85 117 IPR016177 GO:0003677
Spst3g02443 383 Gene3D AP2/ERF domain 150 211 IPR036955 GO:0003700|GO:0006355
Spst3g02443 383 Gene3D AP2/ERF domain 30 117 IPR036955 GO:0003700|GO:0006355
Spst3g02443 383 MobiDBLite consensus disorder prediction 221 268 - -
Spst3g02443 383 Pfam AP2 domain 150 201 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02443 Spst-Chr3 70670951 70673501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02443 86 223 AP2-EREBP Transcription Factor Family AT3G54320 78.417 2.94e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst3g02443 AP2 7.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02443 - - gmx:100799621 618.616