Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02442 ATGGCCACGAACCCCATTGACAGATGTTGGAGGTGTGACCCCAACTGGGCCGACAACAGGCAGAAGCTTGCAGATTGCGTTCAGGGCTTTGGGAGAAACACTATTGGAGGAAAGGGTGGTCCATTCTATGTGGTCACAGACCCTTCAGATGACAACATGGTGGACCTAAAGCCAGGAACTCTTCGCCATGCAGTTACACGTAATGGTTCATTGTGGATCATCTTTGCTCGCAGCATGTTCATCACGCTTAAGCAGGAGCTCATCATGACCGGTGACAAGACCATTGATGGAAGAGGCGTTGAGGTCTACATTGCCGGTGGTGGTGCTGGCATCACCATCCAGTTTATCAAGAACGTCATCATCCATGGAATTAAGATCTACGGCATTCAGGTTCATGGGGGTGGAATGATCAGGGATTCTGAGACACATTATGGGTTTAGGACTCAGAGTGATGGAGATGGCATTTCCATCTTTGGTTCTAGCAATGTTTGGATTGATCATGTTTCCATGAGAAACTGCTATGATGGACTTATTGATGTCATCATGGGATCCACTGCCATTACCATTTCCAACAGCCATTTCACAGACCATAACGAGGTGATGCTCTTTGGTGCTAGTGACAGCTACGATGATGATAAGATCATGCAAGTCACTCTTGCATTCAACCACTTTGGCAAGAGATTAATTCAAAGGATGCCTAGATGCAGACATGGTTTCATCCATGTGGTTAATAACGATTACACTCACTGGGAAATGTATGCGATTGGTGGCAGCAAGCATCCCACCATCATAAGCGAGGGTAATCGATTTATTGCTCCTGATAACATACATGCTAAACAGATCACAAAGAGAGAATACTCTCCAGAGAACGTTTGGTCAGCATGGCAGTGGAGATCAATCAATGATGAGTACATGAATGGAGCATATTTCGTGGAATCTGGGCCTGAGCTTGTTAACAGACCATTCTCAAGGTATGACATGATCACAGCCAAGCCAGGAACTTACGTGGGAAGGCTTACACGCTATGCTGGCAGCCTTAGGTGTAGAGTGGGTAAACCTTGTTAA 1065 0.4601 MATNPIDRCWRCDPNWADNRQKLADCVQGFGRNTIGGKGGPFYVVTDPSDDNMVDLKPGTLRHAVTRNGSLWIIFARSMFITLKQELIMTGDKTIDGRGVEVYIAGGGAGITIQFIKNVIIHGIKIYGIQVHGGGMIRDSETHYGFRTQSDGDGISIFGSSNVWIDHVSMRNCYDGLIDVIMGSTAITISNSHFTDHNEVMLFGASDSYDDDKIMQVTLAFNHFGKRLIQRMPRCRHGFIHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAPDNIHAKQITKREYSPENVWSAWQWRSINDEYMNGAYFVESGPELVNRPFSRYDMITAKPGTYVGRLTRYAGSLRCRVGKPC 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02442 354 SMART amb_all 78 276 IPR002022 -
Spst3g02442 354 SUPERFAMILY Pectin lyase-like 4 345 IPR011050 -
Spst3g02442 354 Gene3D - 3 347 IPR012334 -
Spst3g02442 354 PRINTS Pollen allergen Amb family signature 151 172 IPR018082 -
Spst3g02442 354 PRINTS Pollen allergen Amb family signature 50 75 IPR018082 -
Spst3g02442 354 PRINTS Pollen allergen Amb family signature 26 43 IPR018082 -
Spst3g02442 354 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Spst3g02442 354 PRINTS Pollen allergen Amb family signature 253 272 IPR018082 -
Spst3g02442 354 PRINTS Pollen allergen Amb family signature 295 319 IPR018082 -
Spst3g02442 354 PRINTS Pollen allergen Amb family signature 231 250 IPR018082 -
Spst3g02442 354 PRINTS Pollen allergen Amb family signature 325 348 IPR018082 -
Spst3g02442 354 Pfam Pectate lyase 117 270 IPR002022 -
Spst3g02442 354 PANTHER PECTATE LYASE 18-RELATED 2 352 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02442 Spst-Chr3 70334286 70336281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02442 1 354 Polysaccharide Lyase AT1G14420 65.460 2.46e-172 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02442 K01728 - gmx:100798579 635.565