Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02436 ATGTCTAGCAGAAGATCTCGTTCCAGACAATCGGGTGTTTCCACTGAGATCACTGATGCTCAGATCACTGATCTCGTTTCCAAGTTACAACAACTTATCCCTGAGCTTCGCGCAAGACGTTCCGACAAGGTTTCAGCTTCTAAGGTGTTGCAGGAGACTTGCAACTACATCAAAAGCTTGCACAGAGAGGTTGATGACCTAAGTGACCGGTTGTCACAACTTTTAGCCACCACAGACTCCAACAGTGCCCAAGCAGCCATTATTAGGAGCTTACTTATGTAA 282 0.461 MSSRRSRSRQSGVSTEITDAQITDLVSKLQQLIPELRARRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02436 93 Pfam Helix-loop-helix DNA-binding domain 21 61 IPR011598 GO:0046983
Spst3g02436 93 CDD bHLH_AtPRE_like 17 77 - -
Spst3g02436 93 Gene3D - 19 89 IPR036638 GO:0046983
Spst3g02436 93 Coils Coil 57 77 - -
Spst3g02436 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Spst3g02436 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Spst3g02436 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Spst3g02436 93 FunFam Transcription factor ILI6 7 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02436 Spst-Chr3 69314999 69315853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02436 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 70.213 3.60e-36 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g02436 HLH 8.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02436 - - gmx:100791371 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02436 3 69314999 69315853 Spst3g02436 3 69314999 69315853 ECH
Spst3g02436 3 69314999 69315853 Spst9g02329 9 54645004 54646078 ECH
Spst3g02436 3 69314999 69315853 Spst1g01316 1 16128376 16129921 ECH