Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02433 ATGTGGGAAGTAGATGGAGATATATATGATAGGGAAAAGGACAAAAAAAAGCAGCTATGGTGGGGTCATGATAAGAAGAAGAAGAAGACTAGCAATGATATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACACCTCACCAAGATGACCATCAACCTCCACCTTCACTCAACTCAATTATAACTTCATGTGCACCTCAAGAGTATCATGGAGGAGCATCCTTTCTAGGCAAGAGATCTATGTCATTTTCAGGGATTGAACTTGGAGAAGAAGCTAATGCTGAGGAAGATTTGTCTGATGACGGATCACAGGCAGGAGAAAAGAAGAGGAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAAAGCTTTGAGTTGGGAAACAAGCTTGAACCCGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGCTTGCAGCCTAGACAGATTGCTATATGGTTCCAGAACAGGAGGGCTAGGTGGAAAACCAAGCAGTTGGAGAAGGACTATGATCTTCTCAAAAGACAATATGAAGCTATCAAGGCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACTGAGATATTGGCACTGAAAAGCAGAGAACCCACTGAATCCATCAATCTCAATAAAGAAACCGAGGGCTCCAGCAGCAATAGAAGTGAGAACAGTTCAGAAATCAAGTTGGATATTTCAAGAACCCCAGCTATTGACAGTCCTCTATCCACTCAGCAGAACAGCAGAAACCTCTTTCCATCTTCTACTAGACCAACAGGAGTGGCTCAGCTTTTCCAAACCACTTCAAGGCCAGACCTTCAGTGCCAAAAGATTGACCACATGGTCAAAGAAGAGAGCCTAAGCAATATGTTTTGTGGCATTGATGATCAATCTGGCCTTTGGCCTTGGTTGGAGCAGCAGCATTTCAATTGA 936 0.4338 MWEVDGDIYDREKDKKKQLWWGHDKKKKKTSNDMAFFPANFMLQTPHQDDHQPPPSLNSIITSCAPQEYHGGASFLGKRSMSFSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSEIKLDISRTPAIDSPLSTQQNSRNLFPSSTRPTGVAQLFQTTSRPDLQCQKIDHMVKEESLSNMFCGIDDQSGLWPWLEQQHFN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02433 311 FunFam Homeobox-leucine zipper protein ATHB-13 100 167 - -
Spst3g02433 311 Pfam Homeobox associated leucine zipper 163 203 IPR003106 GO:0006355|GO:0043565
Spst3g02433 311 CDD homeodomain 108 164 IPR001356 GO:0003677
Spst3g02433 311 PRINTS Lambda-repressor HTH signature 143 159 IPR000047 GO:0003677
Spst3g02433 311 PRINTS Lambda-repressor HTH signature 134 143 IPR000047 GO:0003677
Spst3g02433 311 MobiDBLite consensus disorder prediction 91 111 - -
Spst3g02433 311 MobiDBLite consensus disorder prediction 211 258 - -
Spst3g02433 311 MobiDBLite consensus disorder prediction 208 258 - -
Spst3g02433 311 ProSitePatterns 'Homeobox' domain signature. 138 161 IPR017970 GO:0000981|GO:0006355
Spst3g02433 311 SUPERFAMILY Homeodomain-like 101 165 IPR009057 -
Spst3g02433 311 SMART HOX_1 106 167 IPR001356 GO:0003677
Spst3g02433 311 Pfam Homeodomain 108 161 IPR001356 GO:0003677
Spst3g02433 311 Gene3D - 100 169 - -
Spst3g02433 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 80 274 IPR045224 GO:0003700
Spst3g02433 311 ProSiteProfiles 'Homeobox' domain profile. 103 163 IPR001356 GO:0003677
Spst3g02433 311 Coils Coil 155 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02433 Spst-Chr3 69180490 69183832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02433 30 311 Homeobox Transcription Factor Family AT1G69780 62.207 5.97e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst3g02433 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02433 K09338 - gmx:100801479 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02433 3 69180490 69183832 Spst2g01541 2 14109709 14111306 PCT