Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02432 ATGATGCTGCAAGATATGAAGCAGCAGCACAATGAAGAGTCTACGAAAAAGGAGGACAATGAAGAGTCTACGAAGAAGGAGCACAATGAAGAATCTAAAAAGAAGGAGCGTCACATTGTGACTTGGACTCAAGAGGAGGATGATATACTAAGAGAGCAGATTGGTATTCATGGAACTGAAAAATGGTACACATACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCAGCTGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAACAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACACTCTGCAGAAAGAAAGAAAAACATGCAGCATTAGCAAAAGAGAACAGCACTTCATACTTCAATTCAAATAACAAGAGAATTATGTTCCAACATTATAATAATATGGATACAACATCAGAATCTGGAGTATCTATTAAGAAGATGAGGAGGGCCCATATTCCTGATGATGCAGAAAAGATCAAATTTGGGGACCGATCACATTTACGTAATGGAGCTCCATTAAATCAACAGCAAAGAGCACCATTTACAGTACTAGCTCAAAATTCCCATAATTCAGACAACTTGCCAGACCAGCATCATGTTTGCAATCCCAAGTTTGATACTGCCCACGATAACAGGATTCAAGGAACATTTCTCAAAAAGGATGACCCAAAGAGAAGTGCATTGATGCAACAGGCAGAGTTACTGAGTTCACTAGCTCTAAAAGTTGATACCAAAAATATGGACCAAAGTCTAGAACACACTTGGAAGGTTCTTCAAGAGTTTCTGAGTCGAAATAAAGAATCAGATATCCCTGGTCACAAAATTCCAGATTTACGGCTTGTTGATAAAGATATGATTAAGGATTTGAAGAGTGTTAATGAGGAAGGCCAGACTTGTTGGAGGCAAGTGGAGTGGTACGAAGACTCTCCAGGTAGTTCTGGATACAGTACAGAATCAACTTTCCTGTGCCGGTCGGCTGGTGATAATTCAGAACACCCATTGCATCAGGATATTGGAACCGAAATGAAGTCTGAACAACTTGGAGATGAAAACGGAGTAGGTAGAGAAGAGAAAAGGGTTCTTGCTACTGCAAATATGGATCAAGATATGTTACGATGTTGTGAGGAACAGACAAACAAGGATGGGATTGTTTCTACCTCATCAAGATTGGAGTTCAACTCCCCTGTTCAAGTAACCCCTCTGTTCAGATCCATGGCAGCAGGAATTCCCAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCTTAAGGAAAACACTAGGAGTGGAATCTCCATCTATCAACCCAAGTGCCAACTCATCACAACCACCACCCTGCAAAAGAGCCCTACTACCCAGTCTATAA 1410 0.4078 MMLQDMKQQHNEESTKKEDNEESTKKEHNEESKKKERHIVTWTQEEDDILREQIGIHGTEKWYTYLNSDFKKGGWSAEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKKEKHAALAKENSTSYFNSNNKRIMFQHYNNMDTTSESGVSIKKMRRAHIPDDAEKIKFGDRSHLRNGAPLNQQQRAPFTVLAQNSHNSDNLPDQHHVCNPKFDTAHDNRIQGTFLKKDDPKRSALMQQAELLSSLALKVDTKNMDQSLEHTWKVLQEFLSRNKESDIPGHKIPDLRLVDKDMIKDLKSVNEEGQTCWRQVEWYEDSPGSSGYSTESTFLCRSAGDNSEHPLHQDIGTEMKSEQLGDENGVGREEKRVLATANMDQDMLRCCEEQTNKDGIVSTSSRLEFNSPVQVTPLFRSMAAGIPSPQFSESERNFLRKTLGVESPSINPSANSSQPPPCKRALLPSL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02432 469 MobiDBLite consensus disorder prediction 1 37 - -
Spst3g02432 469 PANTHER MYB PROTEIN-RELATED 41 141 - -
Spst3g02432 469 SMART sant 71 119 IPR001005 -
Spst3g02432 469 MobiDBLite consensus disorder prediction 444 461 - -
Spst3g02432 469 MobiDBLite consensus disorder prediction 9 37 - -
Spst3g02432 469 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Spst3g02432 469 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Spst3g02432 469 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Spst3g02432 469 CDD SANT 75 116 IPR001005 -
Spst3g02432 469 MobiDBLite consensus disorder prediction 444 469 - -
Spst3g02432 469 Coils Coil 3 31 - -
Spst3g02432 469 Gene3D - 74 146 - -
Spst3g02432 469 SUPERFAMILY Homeodomain-like 60 123 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02432 Spst-Chr3 69133086 69137537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02432 61 469 MYB Transcription Factor Family AT1G14350 51.816 8.07e-129 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst3g02432 Myb_DNA-binding 5.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02432 K09422 - gmx:100807667 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02432 3 69133086 69137537 Spst3g02432 3 69133086 69137537 ECH
Spst2g01571 2 14449640 14454571 Spst3g02432 3 69133086 69137537 PCT