Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02429 ATGTCCACATCCTCCAACGTGGTGGTTCTAGACAACGGCGGCGGGTTAATCAAGGCGGGCCTCGGCGGCGAACGCGACCCCTCCGCTGTGGTCCCCAACTGTCTCTACCGCCCCCCGGCCTCCAAGAAATGGCTCCACCTGACCTCCCGCGACGAGGACCTGACGTCTGCCGCCGTCCGCCGCCCCATGGACCGAGGATACCTGATAAACCCGGAGCTGCAGCGGGAAATCTGGTCGCACCTCTTCTCATCCGTCCTCCGCATAAACCCCTCGCAGTCCTCGCTCCTCCTCACGGAACCCCTCTTCACGCTCCCCTCCATCCAGCGCTCTCTCGACGAGCTCGTCTTCGAGGACTTCAACTTCCGGGCCCTATACGTGGCTCATCCCCCCGCCCTCGTCCACCTCCACGAGGCTACCCGCCGGCCCAGTGGGCTTCTCTCCCGGGCTCAGTGCAGCCTCGTCGTCGACGCAGGGTTCTCCTTCACCCACGCCTCTCCCGTCTTCCACAACTTCCCTCTCAATTATGCCGTGAGGAGGATTGACTTGGGCGGCAAGGCCCTCACCAACTACCTCAAGGAACTCGTTTCCTTCCGCTCCGTCAACGTCATGGAAGAGACCTTCATCATCGACGACGTCAAGGAGAACCTCTGCTTCGTCTCCCTCGACATCGACCGCGACCTCACCATCGCCAGGAAGAGTGGGAAAGAGAATCTGTTCAGGTGCACCTATGTGCTTCCGGATGGTGTCACACACACAAAGGGGTTTGTTAAGTATCCAGACCAGGCACGGCGGTATTTTGCATTGAGGGACAATAACCATCCTTCTTCGGCACCAGTGGAGGCAGAGGGGGACACGAATTGCTCAGAAATTGCTGAGCAGCCGGGGGACAGAAAGAGAGTTGATTTGCCAAAAAATGAGTTTGACTTGACAAATGAACGGTTTCTTGTGCCAGAGATGATCTTCCGTCCTGCTGATTTGGGAATGAACCAGGCTGGGTTAGCAGAATGCATTGTTCGAGCTGTTAATGCATGCCACCCATATCTCCATCCTGTACTCTACGAAAGCATCATATTAACCGGTGGAAGCACCTTATTTCCTCAGTTTGCTGAGAGATTAGAGAAAGAGCTTCGGCCTCTAGTTCCTGATGACTATCATGTGAAGATAACAGCCCAAGAAGATCCCATACTAGGTGTTTGGCGTGGAGGGTCACTGTTGGCATCGAGTCCAGATTTTGAAGCAATGTGTGTGACGAAGTCTGAGTATGAGGAGCTTGGTTCTGCTAGATGTCGCAAGAGATTCTTTCATTAA 1308 0.5528 MSTSSNVVVLDNGGGLIKAGLGGERDPSAVVPNCLYRPPASKKWLHLTSRDEDLTSAAVRRPMDRGYLINPELQREIWSHLFSSVLRINPSQSSLLLTEPLFTLPSIQRSLDELVFEDFNFRALYVAHPPALVHLHEATRRPSGLLSRAQCSLVVDAGFSFTHASPVFHNFPLNYAVRRIDLGGKALTNYLKELVSFRSVNVMEETFIIDDVKENLCFVSLDIDRDLTIARKSGKENLFRCTYVLPDGVTHTKGFVKYPDQARRYFALRDNNHPSSAPVEAEGDTNCSEIAEQPGDRKRVDLPKNEFDLTNERFLVPEMIFRPADLGMNQAGLAECIVRAVNACHPYLHPVLYESIILTGGSTLFPQFAERLEKELRPLVPDDYHVKITAQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEELGSARCRKRFFH 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02429 435 Gene3D - 8 426 - -
Spst3g02429 435 FunFam Actin-related protein 6 127 187 - -
Spst3g02429 435 CDD NBD_sugar-kinase_HSP70_actin 8 194 - -
Spst3g02429 435 Gene3D Actin; Chain A, domain 2 35 62 - -
Spst3g02429 435 FunFam Actin-related protein 6 188 249 - -
Spst3g02429 435 FunFam ARP5 actin-related protein 5 homolog 331 397 - -
Spst3g02429 435 SUPERFAMILY Actin-like ATPase domain 150 434 IPR043129 -
Spst3g02429 435 Pfam Actin 4 434 IPR004000 -
Spst3g02429 435 SUPERFAMILY Actin-like ATPase domain 4 135 IPR043129 -
Spst3g02429 435 Gene3D - 127 400 - -
Spst3g02429 435 FunFam Putative actin-related protein 5 398 426 - -
Spst3g02429 435 PANTHER ACTIN 8 426 IPR004000 -
Spst3g02429 435 SMART actin_3 5 434 IPR004000 -
Spst3g02429 435 Gene3D Actin; Chain A, domain 4 188 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02429 Spst-Chr3 69115295 69117939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02429 8 434 Cytoskeleton Gene Families AT3G12110 28.604 6.84e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02429 K11662 - gmx:100819827 779.63