Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02426 ATGGATCAGAAACTTGCTTCTGGGGAAGAAATCGTCGTCAAAAAACCTTCTAGTAACAAGGATGTTCTTGTGGTGTCTTCCGAGGCATCTATATCTACTCCTATATCTGGAGCAAATGTTACTAAACGAAAGCTATCAGAAAAGGAAGTAATTAGTATATCATCAAATGATGGGGTAATTCTTGCAACTGGAGATGAACAGGCCAATGCACAATCTCTTGCTAATTTTTATTCTGGGGACCATGATGAGAAAAGCAGGCTAACAGAAACAGCTATAATAATTCAGGCTGCCCTTAGAGGCTATCAGGCGCGAGGAACATATAAAACTCTAAAGGTTATCATTCCCCTGCAAGCTTATATTCGTGGCCAGTTGGTTCGACGACAAGCTATTTCTGCTTTGTTATGTGTGAAGGCAATAGTTAGATTTCAAGCATTGGCCCGTGGTTACAAGGTTAGGCACTCTGATATTGGCCTTGCAGTCCAGAAAATTTTCAAGGATACTAAATTGCCGAAATTTAAGGGAGTAGTTACATCTACTCAGGCAGTGAATTTCTCAGATAATGTCTTTGTTCACAAGTATGATGGAGATGGTGTGGTGGCTTTGGGTGGTTACAAGAATGAAGGAAAATGGAATGGAGTGTGGGAAAACGAACTCAAGGAAAGCATAAGAATAGCATGCACCCTTAACCCAAGATATGCCTTTCAGCTTCTGGCTTCATCACGCTCTGCTGCTTCTCCACATCGCAAATATAATACTGGTGAATCTAAGTTGGATTGGGAATGGCTTGACCGTTGGACGAAATCACACTTTTGGGTACCTCTTCAAGAAGCGCAGAAACCTGATTCAGTGTCTGATAAGCAAAATGGAAGTTCTCAAATTAAAGGAAATGCCAGGAAAGCACCTGCTTCGAGGATTGGTAATGATTTAGTCTCTGATTCCAACAAACATAAACGGTATCCAAAAAAGGATTCCAACCTCGCATTTCATTCAGCTAAGGAACATACACAAAAAGAACTTGAGAAAAGGAGTTCTATGAAATCTCAAATTCAGAATGTTTCTGATAAGTCCGAGGCTGCTAATGAGAAGAGAACACACATCACAAGAAAAGTTTCAGTTCATACAAAAGTCAATGATGTTCCAGAGGAAGATGCCACTGCTTCTTCAGAGAAGATAAAACATTTGGTAGTGTCAAAGTCAGAAGAGTATGACCTTGAGAAAAGTCCTGGACAGCAAGCAGAAAAGCATGATAATAATGGGTCATGTAATGATACTAATGCTCCCTTTCAATCTAGTTTGAGGAATAGTAAAGATGGAGGAGTCATTGAGGAGTTGAATAATGTAAATTGTAAGAATTTCCACAGAAGAGCATCCCTGCCTGCTAATTTTACAGATCATGAAAGTGTGTTGCATAATAACAGTCCAAGACGTCCTAGTTATATGGCTCCCACTGAATCTACAAAAGCCAAGCTAAGAGGTCAATGCTCTCCCCGGTCTGTTAGTGATTTGGCAGATATAAGTAGTATTACTCGGCGGCTTTCTCTTTCATCTTCGCTCAGTGGCAAGTTAGGTTCGTTCTCTCCACGATCAGATAGATTCGCTGCCTTGAACAACAAGATAAGGACTGATAGATCTCTATCATCTTCAAGGGATGGAACTGGTAAGAATTTAGGATTTTGCACCCTATTCACGTATTCTTGA 1698 0.4034 MDQKLASGEEIVVKKPSSNKDVLVVSSEASISTPISGANVTKRKLSEKEVISISSNDGVILATGDEQANAQSLANFYSGDHDEKSRLTETAIIIQAALRGYQARGTYKTLKVIIPLQAYIRGQLVRRQAISALLCVKAIVRFQALARGYKVRHSDIGLAVQKIFKDTKLPKFKGVVTSTQAVNFSDNVFVHKYDGDGVVALGGYKNEGKWNGVWENELKESIRIACTLNPRYAFQLLASSRSAASPHRKYNTGESKLDWEWLDRWTKSHFWVPLQEAQKPDSVSDKQNGSSQIKGNARKAPASRIGNDLVSDSNKHKRYPKKDSNLAFHSAKEHTQKELEKRSSMKSQIQNVSDKSEAANEKRTHITRKVSVHTKVNDVPEEDATASSEKIKHLVVSKSEEYDLEKSPGQQAEKHDNNGSCNDTNAPFQSSLRNSKDGGVIEELNNVNCKNFHRRASLPANFTDHESVLHNNSPRRPSYMAPTESTKAKLRGQCSPRSVSDLADISSITRRLSLSSSLSGKLGSFSPRSDRFAALNNKIRTDRSLSSSRDGTGKNLGFCTLFTYS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02426 565 PANTHER IQ-DOMAIN 5-RELATED 68 516 - -
Spst3g02426 565 MobiDBLite consensus disorder prediction 310 344 - -
Spst3g02426 565 MobiDBLite consensus disorder prediction 356 412 - -
Spst3g02426 565 Pfam IQ calmodulin-binding motif 116 128 IPR000048 GO:0005515
Spst3g02426 565 Pfam IQ calmodulin-binding motif 91 104 IPR000048 GO:0005515
Spst3g02426 565 Pfam IQ calmodulin-binding motif 137 152 IPR000048 GO:0005515
Spst3g02426 565 Pfam Protein of unknown function (DUF4005) 470 533 IPR025064 -
Spst3g02426 565 MobiDBLite consensus disorder prediction 413 436 - -
Spst3g02426 565 ProSiteProfiles IQ motif profile. 87 111 IPR000048 GO:0005515
Spst3g02426 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 152 IPR027417 -
Spst3g02426 565 ProSiteProfiles IQ motif profile. 111 138 IPR000048 GO:0005515
Spst3g02426 565 MobiDBLite consensus disorder prediction 277 436 - -
Spst3g02426 565 SMART iq_5 109 130 IPR000048 GO:0005515
Spst3g02426 565 SMART iq_5 86 108 IPR000048 GO:0005515
Spst3g02426 565 SMART iq_5 134 156 IPR000048 GO:0005515
Spst3g02426 565 MobiDBLite consensus disorder prediction 280 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02426 Spst-Chr3 68960355 68964228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02426 3 554 IQD Protein Family AT1G74690 29.739 5.38e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02426 - - gmx:100800688 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02426 3 68960355 68964228 Spst3g02426 3 68960355 68964228 ECH
Spst3g02426 3 68960355 68964228 Spst3g04678 3 98580588 98587808 ECH
Spst3g02426 3 68960355 68964228 Spst9g02325 9 54566902 54574271 ECH
Spst3g02426 3 68960355 68964228 Spst3g04678 3 98580588 98587808 PCT