Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02418 ATGATATTACCTAATGGTGCCAAAACACAAAGTGGAAAGGCCGAGTGGGTAGTTCAAGATGAACCAGGTGTGTACGTAAGTTTGTTCCCCCAGCCAGGTGGTGGTAATGAGCTTAAGCGTGTTCGCTTCAGCCGAAAGCATTTCACGGAAGAACAAGCTGAGAAATGGTGGACCGAAAATGGAACCAAAATATTGGAGCGGCACAATGTAGTTGCTTTATACATAGCAAGGCACTGCACTTTACATCCTTGGCTGTATGAGCGTTTAATCGTTGGTCCCTTTTACCATTCTGATATTCAATACCTTTGCAAAGAGGTTGTTATTGGCAAATGTGGGAAAAATGGTGATGACTACTCATGTGCATCTTCATGGGAGCAAGTAGCAAAAGTACAATACAAGAACCTGCACTCAAATACAACATTTTTCTTCCTCAAGTTCCATGTCTTCCTAGAACTCACGGTCTTGTCTCGAGTTTTTTTCACTTCACCCTCCTTGTGTGCCCCTCAGGATTTCTGCTATTGA 522 0.431 MILPNGAKTQSGKAEWVVQDEPGVYVSLFPQPGGGNELKRVRFSRKHFTEEQAEKWWTENGTKILERHNVVALYIARHCTLHPWLYERLIVGPFYHSDIQYLCKEVVIGKCGKNGDDYSCASSWEQVAKVQYKNLHSNTTFFFLKFHVFLELTVLSRVFFTSPSLCAPQDFCY 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02418 173 PANTHER PROTEIN BREVIS RADIX-LIKE 1 13 73 IPR044532 -
Spst3g02418 173 ProSiteProfiles BRX domain profile. 14 69 IPR013591 -
Spst3g02418 173 Pfam Transcription factor regulating root and shoot growth via Pin3 13 68 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02418 Spst-Chr3 68684789 68686700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02418 12 70 Major Intrinsic Protein MIP AT1G31880 52.542 5.39e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02418 - - lja:Lj0g3v0293039.1 134.035