Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02402 ATGGAAGAAAGAAATGAGAACGGTGAGAAACTAGATGAGGTTATGCTACCAGGTTTCAGGTTTCATCCAACAGACGAGGAGCTTGTTGGATTTTACCTGAAGAGAAAGGTTCAACAGAAGCCTCTTTCTATTGAGCTCATCAAGCAGCTTGATATCTACAAGTATGATCCTTGGGATCTTCCAAAGTTCGCCACCACTGGGGAGAAAGAGTGGTATTTCTACTGCCCCAGAGACAGAAAGTACAGGAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAGGCTACGGGTACGGATCGCCCTATATATTCCTCGGAGGGTTCCAAGTGTATTGGTCTGAAGAAATCTCTAGTGTTCTACAAAGGTAGAGCTGCCAAAGGGATTAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCACTAACCCATCCTCATCCCCGAAGAAGTTCATTGACAAGACCATTCCTGCTAACGAGTCCTGGGCAATCTGCAGGATCTTCAAGAAAACCAATGCTACAGCTCAACGAGCTCTCTCTCATTCTTGGGTCTCACCCTTACCTGAATCCACCACTTCAGATCATATGCTAGCCGCTGATAGATATGGCAACCAAATTTCTACAACAAACATGCCATTGACAAAGAAAACTAGCTTAGTTAGCCAGTTTTGTACTTTTAATCACAATGACACACAACACTCAACCACTACTAGTAGTACCCCTTGCCCTATAGATATTCTAGCTTCTTATAACAAATCAATTATCAATCCATTAATGCTTCACAAGCCCTTAGATCTGTTACCCATTTCAAATGGAGACCTTAGCACTGGCTTAATATTCTCATCTCCTCTTGAAACTTCAACAAACAGTGCAAAATCTTCAATGGATGTCTCTTCGTTGCTATTGAGTACCTCATCTTCCGTGCTTGGAGAATTTAATAGGAAAACCTCTGAAGGAATGAGCACAAACTTTGGTGAGTTACAGGAGCATTGTAACAGCTACCACATACCACTACTACGTGACATGCAAGGGACCTTTGGCAACCACGATGAAAATGTACTGGTAAAGATTCCTCATGTGAACGTGCATCGTGTTGGTGACCAACAATCGGAGACAGTGCGACCCATTGGGTTTCCATTCAGTACTATGCCGTTCAATATAAGCGATGCATGGAAGTCAAATGTGCTTTGGGATTCTTCATCTTTGTCATTGTGA 1227 0.4287 MEERNENGEKLDEVMLPGFRFHPTDEELVGFYLKRKVQQKPLSIELIKQLDIYKYDPWDLPKFATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTNPSSSPKKFIDKTIPANESWAICRIFKKTNATAQRALSHSWVSPLPESTTSDHMLAADRYGNQISTTNMPLTKKTSLVSQFCTFNHNDTQHSTTTSSTPCPIDILASYNKSIINPLMLHKPLDLLPISNGDLSTGLIFSSPLETSTNSAKSSMDVSSLLLSTSSSVLGEFNRKTSEGMSTNFGELQEHCNSYHIPLLRDMQGTFGNHDENVLVKIPHVNVHRVGDQQSETVRPIGFPFSTMPFNISDAWKSNVLWDSSSLSL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02402 408 SUPERFAMILY NAC domain 14 174 IPR036093 GO:0003677|GO:0006355
Spst3g02402 408 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Spst3g02402 408 FunFam NAC domain-containing protein 35 24 177 - -
Spst3g02402 408 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Spst3g02402 408 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Spst3g02402 408 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02402 Spst-Chr3 68191898 68193523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02402 1 316 NAC Transcription Factor Family AT1G26870 60.061 9.75e-116 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g02402 NAM 6.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02402 - - vra:106768003 729.169