Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02396 ATGGACCTGACCTCCAGGAGTACCCACACACCACACACCTTGGATGCTGAGACTAAAAACACATTACCCATTAACCCCACCAACAGTAACACCACAAAGTCTCTATCTTTCTCCAACGGCACCCCCAAGCGCCACCCCACCACCTCCACCGGTGCTCCGTGGTCACAACCACCGTCCATGGTCGTTTCCTACAAAGAATGTCTCAAAAACCACGCCGCCAGCATAGGTGGCCATGCACTTGATGGCTGTGGCGAGTTCATGCCTTCCTCCTCCATCAACCCCACCGACCCTCGCTCACTCAAATGCGCCGCGTGTGGCTGTCACCGCAACTTCCACCGCCGTGATCCTCAAGAACACATCAACCTCAACATCAACAACGTTAACAGAAACGCCATTACCATGGCCACTACCACCACCAACAACAATAACCCCAGTTTTCTTAGCTGCATCTACACCCCTTCAGCACCAGCACCAATCTCTCAGCGAGCCATGAGCCAAAGCACGAGTCCGAGCTTGAGTTCGAGCCCGAGCCACAGTCCAAGCCCGATGTCAAGCCCCTCACCTCCTCCACTCTCTCACTTACCACCGTACCACGCTTCAGCACCACACATGCTTTTAGCCCTCGGCACTGCCTATTCTACACCGTCGGATGAACATCAGCACCACAAAGGCCTCACCTTTTCAAGCGTGATGCTGAATACCGAGAACCCGAAGAAGAGGTACAGGACCAAATTCAGCAAGGAGCAGAAGGAAAAGATGCATAGCTTCTCCGAGAAACTGGGATGGAGAATGCAGAAAGGGGATGATGGATTGGTCCAGGAATTTTGTAATGACATTGGGGTCTCTAGAGGTGTCTTCAAGGTGTGGATGCACAACAACAAGAACACTCTCAGGAAAAGATCGGATCAAGGGGAAAACGCAAATGCAAATGAAAATTCTCCTCGAAGTACTGGGGATCATGATGACGGCAATAATACCAGTGGTGGAGGTGGCTTTGATAGTGATATCAACAACCCCTACAACCCAAATAGCAACAACAGCAACAATGATATTCACATAAATGAAGAAGATGGATGTGGTAATGTTCGTGTTTCTCTTAATGAGTTGTCATCTTAG 1116 0.5018 MDLTSRSTHTPHTLDAETKNTLPINPTNSNTTKSLSFSNGTPKRHPTTSTGAPWSQPPSMVVSYKECLKNHAASIGGHALDGCGEFMPSSSINPTDPRSLKCAACGCHRNFHRRDPQEHINLNINNVNRNAITMATTTTNNNNPSFLSCIYTPSAPAPISQRAMSQSTSPSLSSSPSHSPSPMSSPSPPPLSHLPPYHASAPHMLLALGTAYSTPSDEHQHHKGLTFSSVMLNTENPKKRYRTKFSKEQKEKMHSFSEKLGWRMQKGDDGLVQEFCNDIGVSRGVFKVWMHNNKNTLRKRSDQGENANANENSPRSTGDHDDGNNTSGGGGFDSDINNPYNPNSNNSNNDIHINEEDGCGNVRVSLNELSS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02396 371 Gene3D - 230 299 - -
Spst3g02396 371 MobiDBLite consensus disorder prediction 158 180 - -
Spst3g02396 371 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Spst3g02396 371 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Spst3g02396 371 SUPERFAMILY Homeodomain-like 233 299 IPR009057 -
Spst3g02396 371 MobiDBLite consensus disorder prediction 1 58 - -
Spst3g02396 371 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
Spst3g02396 371 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 297 - -
Spst3g02396 371 MobiDBLite consensus disorder prediction 296 356 - -
Spst3g02396 371 NCBIfam homeobox domain, ZF-HD class 238 295 IPR006455 -
Spst3g02396 371 FunFam Zinc-finger homeodomain protein 2 226 299 - -
Spst3g02396 371 MobiDBLite consensus disorder prediction 1 57 - -
Spst3g02396 371 MobiDBLite consensus disorder prediction 158 198 - -
Spst3g02396 371 MobiDBLite consensus disorder prediction 181 196 - -
Spst3g02396 371 MobiDBLite consensus disorder prediction 306 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02396 Spst-Chr3 68086689 68087804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02396 60 297 ZF-HD Transcription Factor Family AT1G69600 46.531 6.99e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst3g02396 ZF-HD_dimer 3.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02396 - - vum:124843063 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02396 3 68086689 68087804 Spst3g02396 3 68086689 68087804 ECH