Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02394 ATGAGCGATCATCTGGTGCTGTTCGTGGACCGTCTGGTGCGGCCCGTGCCGGTGATGGAGCCGCTGGCGCAGCACCCGATCCAACCCACCCCCGAGCCCTCGACCCCCGTCAATGAGGCCGCGGCGGGCCCCTCCGTCTCCGCTCACGCGACCGACGACGACAGCGACGACGAGGAGGCGCTGCTGCTGAATTTGGCGGAATGTCGCATTTGCCAAGAGGAGGATAGCGTCAACAATTTAGAGACCCCTTGCTCCTGCAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGCGTACAGCATTGGTGTAATGAGAAAGGAGATATAATTTGTGAGATTTGTCACAAGTCGTATGAACCTGGTTATACTGCCCCTCCACCTCGTCCTCAACCCGAAGAAACTACCATTGATATAGGAGGAGGCTGGACAATCTCTGGCATGCCATTAGATTTACGCGACCCCCGACTCTTGGCAATTGCAGAGGCAGAACGTCAATTCTTGGAAGCTGAATATGATGGATATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGTCGTTCAGTTGCTTTGATTTTAATGGCCCTTTTACTTTTGAGGCATGCTCTTTCTGTCACGGATGCTGATGCTGAAGATGATCCATCTACATTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCCTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTTCTACAATCTGAGCAACGTAGGGGTCTGCAATTTGCCATAGCACCAGTACCAACAATGAACACACACCATGACCAATTGTAA 861 0.511 MSDHLVLFVDRLVRPVPVMEPLAQHPIQPTPEPSTPVNEAAAGPSVSAHATDDDSDDEEALLLNLAECRICQEEDSVNNLETPCSCSGSLKYAHRKCVQHWCNEKGDIICEICHKSYEPGYTAPPPRPQPEETTIDIGGGWTISGMPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSVALILMALLLLRHALSVTDADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSEQRRGLQFAIAPVPTMNTHHDQL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02394 286 MobiDBLite consensus disorder prediction 23 55 - -
Spst3g02394 286 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
Spst3g02394 286 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
Spst3g02394 286 CDD RING_CH-C4HC3_MARCH 68 114 - -
Spst3g02394 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 122 IPR013083 -
Spst3g02394 286 SMART ringv_2 67 114 IPR011016 GO:0008270
Spst3g02394 286 Coils Coil 156 176 - -
Spst3g02394 286 FunFam RING/FYVE/PHD zinc finger protein 56 124 - -
Spst3g02394 286 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 247 IPR033275 -
Spst3g02394 286 Pfam Protein of unknown function (DUF3675) 119 237 IPR022143 -
Spst3g02394 286 SUPERFAMILY RING/U-box 66 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02394 Spst-Chr3 67998815 68000843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02394 56 114 C3H Transcription Factor Family AT2G37950 40.323 2.24e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02394 - - gmx:100817542 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02394 3 67998815 68000843 Spst3g02394 3 67998815 68000843 ECH