Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02389 ATGAAGGCGTGGCCTGCTGGTGTCGCATACTCTTCACAAGAAAACACACATAGCCTCACCCGATACGCTTCTTCTTCTTCATACTCTTCTTCCCCTCCGTCCATGGGAATGGTTTATGCTGATATGGATTCTCTTTCTCTTTGTTCCAACTATGGTGTGGTTTCATCTCATCAAGATTGTTATGTCTCCAACGGCGGCACAAACTGGGGTTTGCCCTTTATGAGGGAATGCCTTGGGAGGAACTTTGAGGAACATCCCACCAGTGATGGAGCGGAAGAGGGTAAAGGGTCTGATAGCAGTGATGATGGGGGTGGGGAAGACAGTGACAAAGTTAACCATAATGCTAATAACTTTAACGACGAGAACCCTAATGACAATTCTAATAGTGGTTCAGGGCATTCCAAGCTCTGTGCAAGAGGGCATTGGAGACCAGCAGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTTTATGGCCCTCAGAACTGGAACCTCATAGCCGAGAAGTTAGAAGGAAGATCAGGCAAGAGTTGTAGACTGAGGTGGTTCAACCAGTTGGACCCGAGAATCAATAGGAGAGCGTTCAGTGAAGAAGAGGAAGAGAGACTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGAAGAACAGATAATGCAGTGAAGAATCACTGGCACGTTATAATGGCCAGAAAGTACAGAGAGCAGTCTAGTGCCTACAGGCGGAGGAGGCTGAGCCAATCTGTTTACAGGAGAGTGGAGGAAAACACAACAAGCAGCATTGTCTCTAGAGACACAGCCACTGCAGGGACAGAACCACCACCACCTTATTGTCTCAATCTCCCAAATGGAGGACTTGCCAACAACAATAACATGCCTAGTTTCCCATATGCTGCTGCACCCTTCCATGGAGTAGTTTCTCCTCCTGGTGGGGTTGAGTATAGCTTAAATGGCTCACCCCACATGACTTCTTCCAAAGAAGCAATCTCAACCACCAAGCTGGCCCCTCCTCATATTGCCTTGTATCCTCAACAAACACCACTTGATTTCTTTTCGGGTGCTAGAAGCAATGACATGGTGGGAGACTATTTTGGCCAGAATCATCACCAACCGTCTGGTTTCTACACTCATTACCCCCAATATCTGATGCTAATGCAACACCAAAACAATCACAACTTTTACGGTTTCTCAAATTCCACAGCACAGATATTGGGCAGTGAAGCTTCACTATCATCAGTGGCAGAACGCAGAGATCAAGCCATGAGCAGTGACCCCCCAGATGCAATTCCACCTCCATTTATTGACTTCCTTGGAGTAGGAGCCACATGA 1350 0.4711 MKAWPAGVAYSSQENTHSLTRYASSSSYSSSPPSMGMVYADMDSLSLCSNYGVVSSHQDCYVSNGGTNWGLPFMRECLGRNFEEHPTSDGAEEGKGSDSSDDGGGEDSDKVNHNANNFNDENPNDNSNSGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRVEENTTSSIVSRDTATAGTEPPPPYCLNLPNGGLANNNNMPSFPYAAAPFHGVVSPPGGVEYSLNGSPHMTSSKEAISTTKLAPPHIALYPQQTPLDFFSGARSNDMVGDYFGQNHHQPSGFYTHYPQYLMLMQHQNNHNFYGFSNSTAQILGSEASLSSVAERRDQAMSSDPPDAIPPPFIDFLGVGAT 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02389 449 CDD SANT 193 233 IPR001005 -
Spst3g02389 449 MobiDBLite consensus disorder prediction 110 134 - -
Spst3g02389 449 PANTHER MYB PROTEIN-RELATED 127 295 - -
Spst3g02389 449 MobiDBLite consensus disorder prediction 82 138 - -
Spst3g02389 449 ProSiteProfiles Myb-like domain profile. 186 236 IPR001005 -
Spst3g02389 449 MobiDBLite consensus disorder prediction 82 109 - -
Spst3g02389 449 SUPERFAMILY Homeodomain-like 139 232 IPR009057 -
Spst3g02389 449 MobiDBLite consensus disorder prediction 263 283 - -
Spst3g02389 449 Gene3D - 139 190 - -
Spst3g02389 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 185 IPR017930 -
Spst3g02389 449 Pfam Myb-like DNA-binding domain 191 234 IPR001005 -
Spst3g02389 449 Pfam Myb-like DNA-binding domain 139 185 IPR001005 -
Spst3g02389 449 FunFam MYB transcription factor 192 264 - -
Spst3g02389 449 Gene3D - 192 263 - -
Spst3g02389 449 SMART sant 190 238 IPR001005 -
Spst3g02389 449 SMART sant 138 187 IPR001005 -
Spst3g02389 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 240 IPR017930 -
Spst3g02389 449 FunFam MYB transcription factor 139 190 - -
Spst3g02389 449 ProSiteProfiles Myb-like domain profile. 139 185 IPR001005 -
Spst3g02389 449 CDD SANT 142 183 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02389 Spst-Chr3 67865716 67867523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02389 29 256 MYB Transcription Factor Family AT1G69560 55.042 1.97e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g02389 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02389 K09422 - gmx:100804537 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02389 3 67865716 67867523 Spst3g02389 3 67865716 67867523 ECH