Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02384 ATGACCGAATTTTCCGGTCACCCAGACAAGTTAACGATGGGCAGGGTAAAACTAAAGATAAAGAGGTTGGAGAACATGAATGGCCGCCAAGCAACGTATGCTAAAAGAAAAAATGGAATTATGAAAAAAGCTGCTGAGTTATCTATATTGTGTGATATAGATATTATACTTCTAATGTTTGCACCAAATGGAAAACCTTCCGTATGTAGAGGACGACGCAGTAATTTAGAGGAAGTTATTACGAAGTTTGCTCAACTTACTCCTCAGGAAAGGGCAAAAAGGAAGTTGGAGACTCTTGAAGTACTGAAGAAAACGTTTAAGAAGTTAGATCATGATGTAAATATACAAGAATTTCTGGGTACAAGTAGTCAAACTATTGAGGTTTGTTTTTCTGAATCACTAACTGACATTGGACAGGATTTAAGTAATCAAGCCAGGCTATTACAGACTCAAATTTCTGAAACTCACAAGAGATTAAGTCAGTGGACTGAATTTGATAAAATAACCAATGTGGAACAACTAGGACAGATGGAAAATTCAATCAGGGAGTCCCTTAATCAAATTCGAAACCGAAAGGAAAATATAAAAAAGCAGCAACTTGTGTCTCTGCAATGCAATAATCAGTTCAATGAAATGAATATTCCCTTCAGAATGAGTGCAGAACAGCATCTCCAACCTCTTTCATGGATTACAAATGGTGACAGCCCAAATATTGTTTTACCTGAGGACTCAAGCATGTTTCTCCACAAAGATGTAGAGGGATCTGCAAGTTCATCTTTTGGAAGTTATGCCAGTTATCTTGGCTCAAGTATGAAGAATGAGATCTCTAACTCGGCACAAGAAAATGGGGTTCTTAGTGACATGACAAGTACTGCCCCTATGAGACTACAATTGAATGGGCAGTTTCCGTACCTGCCATACAATTTTAATGTAATGAATAATTTGAAGTATCAACCAACTGCAGAGATCAATCCACATGAAAATCCTGTAGATTTTAACGTGAATGGAAGTTTAGAAGCACCTAGATCTGGTTTTGATTCTAATCACCATGGTTGGGCTTCCACATCAGGGCCTTGTGGTGTTACTATGTTCGATGAGCAGTTATATGCCCAGGCAAGCTCCACTAAAGTGCACTTTAGCTTCACATAG 1149 0.3821 MTEFSGHPDKLTMGRVKLKIKRLENMNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGKPSVCRGRRSNLEEVITKFAQLTPQERAKRKLETLEVLKKTFKKLDHDVNIQEFLGTSSQTIEVCFSESLTDIGQDLSNQARLLQTQISETHKRLSQWTEFDKITNVEQLGQMENSIRESLNQIRNRKENIKKQQLVSLQCNNQFNEMNIPFRMSAEQHLQPLSWITNGDSPNIVLPEDSSMFLHKDVEGSASSSFGSYASYLGSSMKNEISNSAQENGVLSDMTSTAPMRLQLNGQFPYLPYNFNVMNNLKYQPTAEINPHENPVDFNVNGSLEAPRSGFDSNHHGWASTSGPCGVTMFDEQLYAQASSTKVHFSFT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02384 382 PANTHER SERUM RESPONSE FACTOR HOMOLOG 15 225 - -
Spst3g02384 382 ProSiteProfiles MADS-box domain profile. 13 65 IPR002100 GO:0003677|GO:0046983
Spst3g02384 382 CDD MADS 14 68 - -
Spst3g02384 382 Coils Coil 178 198 - -
Spst3g02384 382 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Spst3g02384 382 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Spst3g02384 382 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Spst3g02384 382 Gene3D - 26 108 IPR036879 GO:0003677|GO:0046983
Spst3g02384 382 SUPERFAMILY SRF-like 14 107 IPR036879 GO:0003677|GO:0046983
Spst3g02384 382 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 66 IPR002100 GO:0003677|GO:0046983
Spst3g02384 382 FunFam Agamous-like MADS-box protein AGL30 26 108 - -
Spst3g02384 382 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02384 Spst-Chr3 67801402 67806587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02384 13 371 Type I MADS-box Gene Family AT2G03060 46.923 1.91e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g02384 SRF-TF 2.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02384 - - gmx:100811701 609.372