Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02383 ATGGCTCTTGTTGGGTTGCTCTTGATGGGTTTTCTCACAATGTTCACCTCTGCTCATGCTTATGATGGAGGGTGGACTAGTGCTCATGCCACCTTCTACGGAGGGAGTGATGCGTCAGGGACAATGGGTGGGGCATGTGGGTATGGGAACCTCTACAGTCAAGGATATGGAACAAACACTGCTGCTTTGAGCACTGCACTGTTCAACAATGGGTTGAGCTGTGGCTCTTGCTTTGAGATTAGGTGTGCCAATGACCACAACTGGTGTCTTCCAGGCTCCATTATGGTCACTGCCACCAATTTCTGTCCACCCAACAATGCCTTACCGAACAATGCTGGTGGCTGGTGTAACCCTCCCCTTCAACACTTTGATCTCGCTCAACCTGTCTTCTTACGCATTGCTCAATACCGTGCTGGAATTGTGCCTGTATCCTTCAGGAGGGTGCCCTGCATGAGAAAGGGAGGGATAAGGTTCACCATCAATGGACATTCCTACTTCAACCTAGTCCTCATCACTAACGTTGGTGGTGCTGGGGATGTGCATGGTGTGGCAATAAAAGGATCAAAAACTGGTTGGATGCAAATGTCAAGGAACTGGGGTCAGAATTGGCAGAGCAACAACTATTTGAATGGTCAAAGCCTCTCTTTCAAGGTTACCACCAGTGACGGCCGAACTGTGGTGTCCTACAATGTTGCCCCAGCAGGGTAA 708 0.4958 MALVGLLLMGFLTMFTSAHAYDGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIRCANDHNWCLPGSIMVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYRAGIVPVSFRRVPCMRKGGIRFTINGHSYFNLVLITNVGGAGDVHGVAIKGSKTGWMQMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSYNVAPAG 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02383 235 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Spst3g02383 235 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Spst3g02383 235 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Spst3g02383 235 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Spst3g02383 235 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Spst3g02383 235 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Spst3g02383 235 PRINTS Expansin signature 230 235 IPR002963 GO:0009664
Spst3g02383 235 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Spst3g02383 235 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Spst3g02383 235 SUPERFAMILY Barwin-like endoglucanases 24 173 IPR036908 -
Spst3g02383 235 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 235 IPR007117 -
Spst3g02383 235 PANTHER EXPANSIN-A15 7 234 IPR002963 GO:0009664
Spst3g02383 235 Gene3D - 12 150 IPR036908 -
Spst3g02383 235 CDD DPBB_EXPA_N 24 150 - -
Spst3g02383 235 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Spst3g02383 235 SMART dpbb_1 60 145 IPR007112 -
Spst3g02383 235 FunFam Expansin 155 235 - -
Spst3g02383 235 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Spst3g02383 235 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Spst3g02383 235 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Spst3g02383 235 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Spst3g02383 235 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Spst3g02383 235 PRINTS Expansin/Lol pI family signature 230 235 IPR007118 GO:0005576
Spst3g02383 235 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Spst3g02383 235 FunFam Expansin 14 151 - -
Spst3g02383 235 SUPERFAMILY PHL pollen allergen 152 234 IPR036749 -
Spst3g02383 235 Pfam Lytic transglycolase 60 145 IPR009009 -
Spst3g02383 235 Gene3D - 155 235 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02383 Spst-Chr3 67795365 67799884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02383 1 234 Expansin Gene Family AT2G03090 82.479 9.66e-148 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02383 - - gmx:100527059 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02383 3 67795365 67799884 Spst3g02383 3 67795365 67799884 ECH
Spst3g02383 3 67795365 67799884 Spst9g02366 9 56061331 56063615 ECH