Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02380 ATGGCAGCAGAAGAAGAAGATCAGTTGCAACAACTCAGATCCAAAGCCACAGAGCTTTTCATCAGAGAAGAATGGAATGCATCAATCGAAGCCTATTCCCACTTCATCACCCTCTGCACCAAAAAACTTTCTCATTCTCACCCAAACCAGAAGCTTAGCAGATCCCTCTGCATAGCCTTATGCAACCGCGCAGAAGCGAGGTCCAAGTTGAAGGACTTCCACAGCGCCCTTCAGGACTGTGACCACGCTTTAGAACTCGATGCAACGCATTTGAAGACCCTTTTGTGCAAAGGTAAGATCTTGCTCTGCCTGAACCGATATGCTTCCGCTCTTGAGTGCTTCAGAACCGCCACGCTTGATGGGAACGCTGAAAGCGTAAGTGGATACTTAGAGAGATGCAAAAGTTTGGAGCTTTTGTCCAAAACGGGGTGTTTCGATCTTTCGGACTGGGTTTCAAATGGGTTTCGAGGGAAGGTTCCAGAGCTTGCAGAGCACATTGGTGCGGTAGAGATTAGAAGATCTGAGATCAGTGGGAGAGGGTTGTTTGCAACGAAGAATATTGATGCTGGTTCATTGATCTTGGTCACCAAAGCAATTTCCATGGAAAGGAGTATCATAATGGGAGGAGTTCAGGATCTGAGTGAGGATGCACAGTTGGCAATGTGGAAGAATTTCATTGACAAGGTTTTTGAGTTTGTTGGGAAGTGTCCCAGGACAAGGGGTTTGATTAATAGGTTGTCATATGGAGAGAATGAGGATCAACTTGAGGTGCCTGATGTTTGTCTCTTTAGACCTGAGAGTGTGGAGAAGGATGGTGAAGTGGAGGTTGGCGTTGATATGGATAAGTTGCTTGGTATATTGGATGTGAATTCTCTCACTGAAGATGCTGTTTCGGCCAATGTGTTGAGGAGGGGCAATGATTGTTATGGTGTTGGCCTATGGTTGCTCCCTTCCTTCATAAACCACTCTTGTTGTCCCAATGCAAGGAGGTTGCATGTTGGGGACTACTTGGTGGTTCATGCTTCGAAGGATTTGAAGGCTGGGGAGGAGGTCACCTTTGCTTATTTTGACCCTTTGTGTGGTTTGAACAAGAGGAAGGAGATGTCTGTGAATTGGGGGATTCATTGCAAGTGCAAGAGGTGTAGGTTTGAGGGGGAAGTGTTCTCCAAACAGGAAATAAGAGAGATAGAGATTGGTCTTGAGAGAGGGATGGATGGGGGGGGTGTGGTGTACAAGTTGGAGGAACAACTGAAAAGGTTGAAGGTTAGGGGGAAAGAAAAAGGGTATTTGAGGGCATCATTTTGGGAAGCGTATTCTCAGACTTATAGGACAGAGAGGGCCATGAAGAGGTGGGGAAGGAGGATTCCTACTGCGGAGGTTGTGGTTGATAGCATCACTGATGTGGTGGGAGGGGATCACAGGTTGCTTAAGTTGCTCATGGAGGAGTTGAAGAAAAATACTGGTGGAGTTGTAGAGAAGGACAAAGTTTTCAAGATGGCAAGAGAAGTGTTTGGGAAGATAGTGAAAAAGCAAGCAATGAAGACACTTCTTCAACTCTGCATTGGTGATTGA 1572 0.4618 MAAEEEDQLQQLRSKATELFIREEWNASIEAYSHFITLCTKKLSHSHPNQKLSRSLCIALCNRAEARSKLKDFHSALQDCDHALELDATHLKTLLCKGKILLCLNRYASALECFRTATLDGNAESVSGYLERCKSLELLSKTGCFDLSDWVSNGFRGKVPELAEHIGAVEIRRSEISGRGLFATKNIDAGSLILVTKAISMERSIIMGGVQDLSEDAQLAMWKNFIDKVFEFVGKCPRTRGLINRLSYGENEDQLEVPDVCLFRPESVEKDGEVEVGVDMDKLLGILDVNSLTEDAVSANVLRRGNDCYGVGLWLLPSFINHSCCPNARRLHVGDYLVVHASKDLKAGEEVTFAYFDPLCGLNKRKEMSVNWGIHCKCKRCRFEGEVFSKQEIREIEIGLERGMDGGGVVYKLEEQLKRLKVRGKEKGYLRASFWEAYSQTYRTERAMKRWGRRIPTAEVVVDSITDVVGGDHRLLKLLMEELKKNTGGVVEKDKVFKMAREVFGKIVKKQAMKTLLQLCIGD 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02380 523 SMART set_7 167 362 IPR001214 GO:0005515
Spst3g02380 523 SMART tpr_5 91 123 IPR019734 GO:0005515
Spst3g02380 523 SMART tpr_5 57 90 IPR019734 GO:0005515
Spst3g02380 523 CDD SET_SMYD 302 381 - -
Spst3g02380 523 ProSiteProfiles SET domain profile. 167 356 IPR001214 GO:0005515
Spst3g02380 523 SUPERFAMILY SET domain 168 381 IPR046341 -
Spst3g02380 523 SUPERFAMILY TPR-like 7 117 IPR011990 GO:0005515
Spst3g02380 523 Gene3D Tetratricopeptide repeat domain 3 141 IPR011990 GO:0005515
Spst3g02380 523 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 5 509 - -
Spst3g02380 523 Pfam SET domain 178 355 IPR001214 GO:0005515
Spst3g02380 523 Coils Coil 2 22 - -
Spst3g02380 523 Gene3D SET domain 277 385 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02380 Spst-Chr3 67561518 67563089 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst3g02380 SET 5.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02380 - - gmx:100812233 903.279