Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02379 ATGGGTAGGTCACCATGCTGTGAAAAAGTGGGCTTGAAGAAAGGCCCTTGGACTCCCGAGGAAGACAAAAAGCTCATGGCTTACATTGAAGAGTTTGGCCACGGAAGCTGGCGTGCCTTGCCTTCCAAAGCTGGCCTTCAAAGATGTGGGAAGAGCTGCAGACTGAGGTGGACTAACTACCTTCGACCCGACATTAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACAATCATTCAACTCCATGCCCTTCTTGGGAACAGATGGTCAGCTATAGCCGCTCAACTTCCAAAGAGAACCGACAATGAGATAAAGAACTACTGGAACACACATCTGAAGAAGAGGCTAACCAGAATGGGGATAGACCCCACCACACACAAGCCCAAAACCGATGCGCTTGGTGGTTCCGGTGGTTGCCAATCAAAGGACGCAGCCAACCTCAGCCACATGGCGCAGTGGGAGAGTGCTCGTCTCGAAGCCGAAGCAAGATTGGTGAGAGAGTCAAAGTTGCAAGTCCAGAACAACCTTGGATCCTGCTCCAACACACAACCCGCGAGGCTCGTCCTCAACAAAATCACTACGCAGCAACCTTCTCTACCACCCTGCCTCGACATCCTCAAAGCATGGCAAAGCTCATGGTCCAAGCCGCAAGCAGGAAGCAAAGAAAGTAACACCAAAATGATGCACAGCATGTACGCCATGATGCTATCCAGTGAAGACACTTTAGAGTCTCCAACCTCCACGTTGTGCTTTCCAGGAACAACCCCAACTATGCTTCCTGTCTCCAACAGCAACAACAACATTGGAGTACTGTTCAATGAAAGCAACAACATGTTTCCTCTCTCGAGCACAAACATGGATAGTGGGTTCATGAAAGAGAGCACAGTGTTACATTTGCAAGACGACGATATTATGGCGGCTGTGGAAGCATTTAGAGCCACTACTACAGGGTACGACAGCAATAATAATGTTGTTCCTCCCACACTCTCCAACGGTGTCGTCCTCGAAGGACTCAACAATGATGAACCGTTGATTTATGAGTCCAACGATAACTTGGGCACGGATGAAGAAAGCATGGCAATGTTAAACGGGGAAGGAAGCCTCTGCAACGTGAACCTGGAAGAGAATAACAAGCATTACTGGAATAACATATTTAATTTGGTGAATGATCCCTTGACTGGTTCCTCTGTCTTCTGA 1197 0.4829 MGRSPCCEKVGLKKGPWTPEEDKKLMAYIEEFGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDALGGSGGCQSKDAANLSHMAQWESARLEAEARLVRESKLQVQNNLGSCSNTQPARLVLNKITTQQPSLPPCLDILKAWQSSWSKPQAGSKESNTKMMHSMYAMMLSSEDTLESPTSTLCFPGTTPTMLPVSNSNNNIGVLFNESNNMFPLSSTNMDSGFMKESTVLHLQDDDIMAAVEAFRATTTGYDSNNNVVPPTLSNGVVLEGLNNDEPLIYESNDNLGTDEESMAMLNGEGSLCNVNLEENNKHYWNNIFNLVNDPLTGSSVF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02379 398 CDD SANT 69 112 IPR001005 -
Spst3g02379 398 Gene3D - 13 66 - -
Spst3g02379 398 CDD SANT 16 61 IPR001005 -
Spst3g02379 398 SMART sant 66 114 IPR001005 -
Spst3g02379 398 SMART sant 13 63 IPR001005 -
Spst3g02379 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst3g02379 398 Gene3D - 69 116 - -
Spst3g02379 398 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst3g02379 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst3g02379 398 FunFam MYB transcription factor 68 129 - -
Spst3g02379 398 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst3g02379 398 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst3g02379 398 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 226 - -
Spst3g02379 398 FunFam MYB-related transcription factor 13 66 - -
Spst3g02379 398 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst3g02379 398 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02379 Spst-Chr3 67529375 67531086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02379 1 184 MYB Transcription Factor Family AT5G15310 78.804 6.85e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g02379 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02379 K09422 - gmx:100809025 665.611