Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02375 ATGGCTACTAGTGTCTTTTCTGCATGTTCAGGTTATGCTTCTCTTTGTCAAGGCAAAAACTTCTTCCCCTTTGCAGCCAAAGGGTCTCCTCTCCTTCACCTCAAAAGGCCACTCTCTGCCAAATGTGTAGCTTCTTTGGGAACTGAGATATCAGTGCCTCCAGCAGTTGACACTTTCTGGCAGTGGCTCAAGGAAGAGGGTGTTGTCTCTGGCAAAACACCAGTGAAGCCTGGTGTGGTGCCAGAAGGCTTAGGACTGGTTGCACTCAAAGACATTTCTAGGAATGAGGTAGTTTTGCAGGTGCCAAAGAGGCTGTGGATTAACCCTGATGCTGTGGCAGCTTCAGAGATTGGAAAAGTGTGTAACGGATTGAAGCCTTGGTTGGCTGTTGCATTGTTTCTGATAAGAGAGAGGTCGAAGGATGACTCTCTTTGGAAGCACTACTTCAGTATTCTGCCCAAGGAAACTGACTCTACTATATATTGGTCAGAGGAGGAGCTCTCAGAGCTACAAGGGACTCAACTTCTGAACACAACGCAGAGTGTGAAAGAGTATGTGAAGAGCGAATTTAGGAGACTGGAAGAAGAAATTATCCTCCCTAATAAGAAGCTTTTCCCTTCTCCTATTACAATTGATGACTTCTTCTGGGCATTTGGAATTCTAAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATTTAGTTGTGATTCCATTAGCTGACTTGATAAACCATAGTGCCGCAGTAACTACAGAAGATCATGCTTACGAAATTAAAGGAGCAGCAGGTCTATTTTCCTGGGATTACCTATTTTCCCTAAGGAGTCCCCTTTCTCTTAAGGCTGGGGACCAGGTGTATATCCAATATGATTTGAATAAAAGCAACGCCGAGCTGGCTCTGGACTATGGTTTCATTGAACAAAATGCGGACCGGAATGCATATACCTTGACACTGCAGATATCTGCGTCAGATCCCTTTTTTGGTGACAAACTAGACATTGCTGAGTCCAATGGTTTTGGTGAGACAGCGTACTTTGACATCTTCTACAACCGCCCACTTCCACCAGGGCTGCTTCCATATCTTAGACTAGTCGCTCTAGGAGGCACTGATGCTTTCCTATTGGAGTCAATATTTAGAAACTCCATTTGGGGTCATCTTGAATTGCCTGTGAGTCGTGACAATGAGGAGTTAATATGCAGAGTGATTAGGGAGACCTGCAAAACTGCCCTTGCTGGATATCATACAACCATTGAAGAGGATCAAAAGTTTAAAGAAGCAAAGCTAAATTCAAGGCTTGCTATAGCAGTGGGAATTAGAGAAGGGGAGAAGAAGCTCCTGCAGCAAATTGATGGGATCTTTAAGGAGAAAGAATTGGAATTGGCCCAGTTAGAATATTATCAAGAAAGGAGGCTCAAGGACCTTGGACTTTGCGGGGAAAATGGTGATATCCTGGGTGACCTTGGAAAATTCTTCTAG 1476 0.4424 MATSVFSACSGYASLCQGKNFFPFAAKGSPLLHLKRPLSAKCVASLGTEISVPPAVDTFWQWLKEEGVVSGKTPVKPGVVPEGLGLVALKDISRNEVVLQVPKRLWINPDAVAASEIGKVCNGLKPWLAVALFLIRERSKDDSLWKHYFSILPKETDSTIYWSEEELSELQGTQLLNTTQSVKEYVKSEFRRLEEEIILPNKKLFPSPITIDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSAAVTTEDHAYEIKGAAGLFSWDYLFSLRSPLSLKAGDQVYIQYDLNKSNAELALDYGFIEQNADRNAYTLTLQISASDPFFGDKLDIAESNGFGETAYFDIFYNRPLPPGLLPYLRLVALGGTDAFLLESIFRNSIWGHLELPVSRDNEELICRVIRETCKTALAGYHTTIEEDQKFKEAKLNSRLAIAVGIREGEKKLLQQIDGIFKEKELELAQLEYYQERRLKDLGLCGENGDILGDLGKFF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02375 491 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 55 437 - -
Spst3g02375 491 Pfam SET domain 83 289 IPR001214 GO:0005515
Spst3g02375 491 Gene3D - 306 470 IPR036464 -
Spst3g02375 491 Pfam Rubisco LSMT substrate-binding 322 446 IPR015353 -
Spst3g02375 491 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 306 470 - -
Spst3g02375 491 SUPERFAMILY SET domain 54 309 IPR046341 -
Spst3g02375 491 ProSiteProfiles SET domain profile. 66 290 IPR001214 GO:0005515
Spst3g02375 491 PIRSF RMT_SET 1 490 IPR011192 GO:0009507|GO:0030785
Spst3g02375 491 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 17 489 IPR011192 GO:0009507|GO:0030785
Spst3g02375 491 SMART set_7 71 296 IPR001214 GO:0005515
Spst3g02375 491 Gene3D set domain protein methyltransferase, domain 1 52 305 - -
Spst3g02375 491 CDD SET_RBCMT 67 305 IPR044431 GO:0016279|GO:0018022
Spst3g02375 491 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 52 304 - -
Spst3g02375 491 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 314 484 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02375 Spst-Chr3 67479648 67482322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02375 59 245 NAC Transcription Factor Family AT3G56570 26.804 5.98e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst3g02375 SET 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02375 K00592 - gmx:100818113 875.159