Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02369 ATGAATGAGAAGATGGGAAGCAAGAGAAAAAGATGGGAAGGTGAAGGAGGGGAAATGAAGAGTGAAGAAGGGAACATTGAATGGGAAAAACTAAGGGAAGAGACAGCATCCATGGCTGCTGCTATACTTGGAGCTAGAAGAGCTAAGAAACGTTACATTGGAGTGAGACAAAGACCTTCAGGGCGATGGGTGGCTGAAATCAAAGACACCATACAGAACATTAGACTTTGGTTAGGCACTTACGACATTGCTGAAGATGCTGCAAGAGCTTATGATGAAGCAGCACGTTTGCTTCGGGGTGCCAACACTCGCACAAACTTCTTTCCATCCCAATCTTCTCCTTCTGTTCCTGCTCTTCCTCCAAAGATTGCCAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAACTTTGCCTCTTCATGTAGGGTAACCACTCCTTTTCCAAGTAACCACTATGACCAAGAAACCAAACTAGAACCTCAACCTCAACCTCAACCAGAACCAGAACCTAAACCCAAATTTTATCACCAAATAGAAGAACCCCACTGCGGGGATATTGTAGACATGGTAGGAAACGGGGCTGTAGAAGAAGGTTATTATAGTGCTAGTTTTAGTTCTTCTGCCATAACTACTTGCGACTATAGTTGTGGTACTAATGAAGAAAATTCTAACCAAGACGGTAGTGGGGAAGATTTTAGCTTCGAGTATCATTGTGCTGAGAATGTTTATGATGAAACCAAGCAGAGTGTAAGTGGTAAAGGAGAGTTTGAAGCTTGTGATGTTGGCATACGTGATTTTCAGTTTTTAGACTCTGCTGGATCATTGAGCTACTCTTTTTCTCCATTTGAGATAGCAGAGGAGATGGTGGGACCCATAGAGGAAAACAAATATTATGATGTTGATGATTCGCCATTAGGTAGAGAAAGTTTCAGGATGGAGTATGAACGTAAATTCTCTGCTTGTCTTTACACCTTAACTGGGGTGTCTGAGTGTTTGAGGCTACAAATTGGACCAGAAAATGGAAAGGAATTGGAAAACTTTTGA 1041 0.4217 MNEKMGSKRKRWEGEGGEMKSEEGNIEWEKLREETASMAAAILGARRAKKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDIAEDAARAYDEAARLLRGANTRTNFFPSQSSPSVPALPPKIAKLLLLRLKARNFASSCRVTTPFPSNHYDQETKLEPQPQPQPEPEPKPKFYHQIEEPHCGDIVDMVGNGAVEEGYYSASFSSSAITTCDYSCGTNEENSNQDGSGEDFSFEYHCAENVYDETKQSVSGKGEFEACDVGIRDFQFLDSAGSLSYSFSPFEIAEEMVGPIEENKYYDVDDSPLGRESFRMEYERKFSACLYTLTGVSECLRLQIGPENGKELENF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02369 346 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Spst3g02369 346 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Spst3g02369 346 MobiDBLite consensus disorder prediction 1 26 - -
Spst3g02369 346 Pfam AP2 domain 51 100 IPR001471 GO:0003700|GO:0006355
Spst3g02369 346 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Spst3g02369 346 MobiDBLite consensus disorder prediction 147 172 - -
Spst3g02369 346 CDD AP2 50 107 IPR001471 GO:0003700|GO:0006355
Spst3g02369 346 FunFam ethylene-responsive transcription factor RAP2-11 50 109 - -
Spst3g02369 346 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 229 - -
Spst3g02369 346 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Spst3g02369 346 SUPERFAMILY DNA-binding domain 51 108 IPR016177 GO:0003677
Spst3g02369 346 Gene3D AP2/ERF domain 50 109 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02369 Spst-Chr3 67391614 67392654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02369 49 127 AP2-EREBP Transcription Factor Family AT5G19790 64.634 2.37e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g02369 AP2 7.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02369 K09286 - gmx:100793940 453.366