Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02249 ATGGATGATGGCAATTTAAAGAAACGAAAGGCATATTGTAATAGGTTTTCATCACAAATGGAAGAAGGTGAAGGAGGCTTTGAAAGTGGTACTAGCTTTTGTGATTCTCCAGCAATAGTTAAAGTTATACAAAAGGTATTTGCAGAGTTGATAGGGACATATTTCTTAATATTTGCTGGGTGTTGCTCTGTGATTCTTAATAATTCAGAAAAGACTAAAGGGCAAATAACATTTCCCGGAATTTGCATAGTGTGGGGTTCAACAGTAATGATCTTGGTTTATGCTCTTGCTCACGTCTCTGGTGCTCATTTCAACCCAGCAGTCACTATCAGCTTTGCTATCCATAGTTCTTTCCTTGCTAGTGGGACATTGTACCTTCTCTTTAAACCAGACGCGAATTCTTATTTTGGAACAGTACCAGCAGGAGCTCATTCTGAATCTCTTGTTTTAGAGTTGCTTACATCATTTCTCTTGATGTTCGTTGTCTCTGCAGTTTCAACGGACAAGAGAGCAAATGGGAAATTTGGAGGGGTTGTTGTTGGTATGACAATCATCGTAGACGTCTTCATTGCTGGACCTGTGTCAGGAGCGTCTATGAACCCAGCAAGAAGCCTTGGACCTGCTTTGGTGATGGGCATTTACAATGGATTTTGGATTTATGTAGTTGGACCATTTGTTGGTGCCATACTAGGTGCAACATGCTATAACCTAATTAGATACACTGACAAACCACTTAGGGATATTGGCTCCGGTGCAAAAATAGTTAATGGTGTATCTATATCAACTTTTCGATAG 795 0.3987 MDDGNLKKRKAYCNRFSSQMEEGEGGFESGTSFCDSPAIVKVIQKVFAELIGTYFLIFAGCCSVILNNSEKTKGQITFPGICIVWGSTVMILVYALAHVSGAHFNPAVTISFAIHSSFLASGTLYLLFKPDANSYFGTVPAGAHSESLVLELLTSFLLMFVVSAVSTDKRANGKFGGVVVGMTIIVDVFIAGPVSGASMNPARSLGPALVMGIYNGFWIYVVGPFVGAILGATCYNLIRYTDKPLRDIGSGAKIVNGVSISTFR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02249 264 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst3g02249 264 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst3g02249 264 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst3g02249 264 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst3g02249 264 PRINTS Major intrinsic protein family signature 150 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst3g02249 264 SUPERFAMILY Aquaporin-like 41 244 IPR023271 -
Spst3g02249 264 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Spst3g02249 264 Pfam Major intrinsic protein 117 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst3g02249 264 Gene3D Glycerol uptake facilitator protein. 17 247 IPR023271 -
Spst3g02249 264 PANTHER AQUAPORIN NIP2-1 21 243 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02249 Spst-Chr3 65158529 65160046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02249 18 261 Major Intrinsic Protein MIP AT5G37810 51.880 6.44e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02249 K09874 - gmx:100819179 355.91