Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02239 ATGGCCGGCGAACTCGCCGGAGACCACACGCCGGAGCTTCTTGGTCTGGTCCACGACATCGCCGGCATGTGCGCCGGCTCCTCCTCCGCCCTGCCCATTGCCGCCGACGCTATGTTCCGTAAGGACTGCACCGATCTGGTTCGCCGGATCTCCCTCCTCACTCACTTGTTTGAGGAGATAAGAGAACTCAACAACAGCAACAACAATGTCCTCGCTTCCGCTTCCGCGTCTTCCTCCTCCTCCCCCTCTTCCGCCGCCTCTTCCTGGTCCTCTGATCTTGTCATCGCTCTTCACTCGGCAAGACGCTTGCTTTCCGTTGCCAGAAACTTCCGTTCCAATTGCTCCTCTGACGGAGCTGCAAAGACCATCGTCTTCCAATTTCAGTGTGTGACATGGAAATTGGAGAAACTGTTGAGCAATTTGCCGTATGACATTTTGGACATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGAACGCAATTGAAACGAGCCACGGATAAGTATGGGTTTATGATTTCAAAGATGCCATCTCATGAATTATCCCAGCCACTGGCTGAAGAAATTAGTCTGGTTCTTGGCAAATCTGTGGGTGGATTGTACAAACAACACAGCTGTCCTGAAAATTTATCAGAACTAGACAGCACTTCTAAAAACAATGGAGAGAATAATTGCAGCACAAATCGGGCTGGATCTCGCTTGGAAAGAGCAAGGAGCATCCCTGCTTCTTCTGAAGTTCCCTCTTTGAATGAAGCTGATCCTGAAAGTCAAGAAATTTCTGGGAGACAGAATCTACCGGAGGTTAAAAAGCCTGAAGCAATTGTAATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCGACTGGTCAGACGTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCTAAAACACAGCAGAAGCTCCAACATTTGACCCTTACACCAAATTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAGCACAACATTGAGCAGCCAACAGGACTAACTAATGGGAGAATAAAGAAAAGTGATGGGTCGTTCAGAGACGTTACGGGTGACATAGCAGCAATTGAAGCTCTGGTGCGGAAGCTCTCCAGCCGGTCTGTGGAGGAGCGCAGAGCAGCTGTTACTGAAATTCGATCTCTCTCCAAACGAAGTACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTCTAACATCAGAAGATGTATTGACGCAAGACAATGCTGTTACTTCAATTCTCAACCTTTCCATTTATGAAAACAACAAAGGACTTATAATGCTTGCTGGTGCCATTCAATCCATTGTCCAAGTCCTCCGGGCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTCTTCAGCTTGTCACTTGCAGATGAGAACAAAATAATCATTGGTGCCTCAGGAGCCATACCCGCTTTGGTAGAATTGCTCCAAAACGGGAGTCCTAGAGGAAAGAAGGATGCAGCAACAGCTTTGTTCAACTTATGCATTTATCAAGGGAACAAGGGCAGGGCCATTAGGGCAGGGATCATCACAGCATTGTTGAAAATGCTTACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTAACAATAATGTCGGTTCTTGCCAGTCACCAAGAGGCAAAAATTGCTATAGTAAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTGAGGACCGGTTTACCTCGCAATAAAGAGAATGCGGCTGCTATTCTACTTGCTTTGTGCAAGAGAGATGCCGACAATCTTGCATGTATAAGTAGACTTGGTGCTGTCATACCTCTCTCTGAACTTGCTCGAACTGGTACAGAGAGGGCCAAACGGAAGGCTACTTCATTACTGGAGCATCTTCGAGTTTACGGGGTCAATACAAGTCTGTACGACTATGAAAACTTGCATATTACTCATCAACAAGATCTTTACATTGAAGCCGAACTCATCAACCATTGTTGTAGATTCAGGATGAGGTCAATACGAGAGATCTGGCTCACTTACTTCAACCGGAAGTCATCTTTGAATCAAACAGCAAGGAAGCAACTGGATCCAGTTTATCAGGAAAAGTCCTCAATATGGTGTATTTGCAATGCTGCACTTCATCATGTCCCATTCAATCAACCTCTTTCAATTTTATACTCACTTTTGCATCAATTCTCGACCACCCTTATCCATGTAAAGTCCATCCATGCACAGATTATTAAGAATTGGGTATCCACTGAAAACTATCTGGCCTCAAAACTCATCAGATCCTACTCTGATCTGGGTTTTCTTCGACCTGCCCGCAAGGTGTTTGATCAATGTTCTCTACCGGGTACCGCTGTTTGCAATGCCATGATGGCTGGCTTCCTGAGGAACCACCAACACATGGAGGTTCCCAAGTTGTTCAAAATGATGGGGTCGGGTGATATAGAAATCGATAGTTACACGTGCATGTTTGCTCTTAAGGCATGCACCAGCTTGTTGGATGATGAAATTAGTATGGAAATAGTCAGGGCAGTGTTTCGAAGGGGGTTTCATTTGCATCCCTATGTTGGTAGTTCAGTTGTTAACTTTTTGGTGAAGTGTGGTTATCTTGATGATGCGCGGAAAGTCTTTGATGTGATGCCAGAAAAGGATGTTGTATGTTGGAATTCTATCATTGGTGGTTATGTTCAGGAGGGACTCTTCAAGGAGGCAATTCAAATGTTCCTTGAGATGATTGGTGGTGGGTTAAGGCCGAGTCCGGTGACAATGGTGAGCTTACTCAAAGCGTGTGGAGACAGTGGGCTTAAAGAACTTGGAACCTCTTCTCATGGTTGTGTCATTGCATTAGGCATGGGGAATGATGTATTTGTGCTTACTTCGTTGGTTTATATGTATAGTAATTTAGGTGACACTGACAATGCTGCTTTGGTTTTCAATGGCATGTCCAATAGAAGTTTGATTTCATGGAATGCTATGATTTCAGGATATGTTCAAAATGGTTTGATACCTGAATCTTTTGCACTCTTTCGTAGACTAGTCCAAAGTGGTTCTGGGTTTGATTCTGGAACCTTGGTTAGCCTTATTCGGGGATGTTCTCAAACATCTGACATGGAAAATGGAAGGATCCTCCATGCTTGTATTATTAGAAAAGGACTTGAATCGAACATAGTTTTGTCCACTTCAATTGTTGACATGTATTCTAAATGTTGTTCCACAAAGCTAGCAACTATTGTTTTCCGAAGAATGGGGAAAAAGAATGTAATCACATGGACTGCTATGCTGGTGGGTTTATCTCAAAATGGCTATGCGGAGGATGCCCTTAAATTATTTTGTCAAATGCAAGAAGAAAAAGTGGCCGCCAATTCTGTCACTCTTGTTAGTCTTGTGCATTGTTGTGCTCACCTAGGATCTCTGAAGAAAGGAAGGAGTGTCCATGGTCATTTGATCCGGCATGGTTATGCATTTGATGCAGTTAATGTGTCAGCGTTGATTGATATGTATGCCAAGTGTGGTAAAATTCGCTCTGCTGAGAAGTTATTCAATAATGGATTCCATTTAAAAGATGTTATACTATGTAACACTATGATTATGGGTTATGGAATGCATGGTCACGGGCATTATGCTCTAGGTGTATATGATAGAATGATAGAGGAAAGGCTCAAGCCAAACCAAACAACATTTGTTTCTCTGTTAACAGCTTGCAGTCACGCAGGCCTTGTTGAAGAGGGTAAGGCTTTGTTCAACTGTATAGAAAGGGATCATAACATTAAGCCTCAGGACAAACACTATGCTTGTCTTGTAGATCTTCTTAGTCGAGCAGGCCGCCTCAAGGAGGCAGATGCATTGGTGAAAGAAATGCCTTTTCAGCCCAGCACAGATGTGCTTGAAGCTTTGCTCAGCGGTTGCAGAACCCATAAGAATATTAACATGGGGATACAGATAGCAGATAGATTAATTTCCTTAGATTACTTGAACTCTGGAATCTATGTCATGTTAGCAAATATTTATGCTGAAGCAGGAAGATGGGAATCAGTGAATAACATAAGAGGCCTCATGAGGATGCAGGGCCTGAAGAAGGTACCTGGTTACAGTTTGATAGAAGTAGAGAACCTGGTACATACATTTTTTGCTAGTGATGATTCACATCCTCGTTGGTCTGAAATTTATGAATTATTAGAAAATTTGAGACTTGAGGTGGAGGCAGAAGGTTACGTTCCTGATACTAGTTGTGTTCTTCGTGATGTAAATGAGCCAATGAAGGTTAAGTTACTCTGGGGACATAGTGAGAGACTAGCTATTGCATTTGGTCTTTTAAGCACACCATATGGAAGCTTGATTAGGATCACCAAAAACCTTCGAGTATGTGTTGACTGTCATACTGTCACCAAATACATATCAAAAATAGTTCAGAGGGAAATTATTGTCAGGGATGCTAATCGTTTCCATCACTTTGTTAACGGGAAATGCTCATGTAATGATTACTGGTAA 4548 0.4307 MAGELAGDHTPELLGLVHDIAGMCAGSSSALPIAADAMFRKDCTDLVRRISLLTHLFEEIRELNNSNNNVLASASASSSSSPSSAASSWSSDLVIALHSARRLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLPYDILDISEEVKEQVDLVRTQLKRATDKYGFMISKMPSHELSQPLAEEISLVLGKSVGGLYKQHSCPENLSELDSTSKNNGENNCSTNRAGSRLERARSIPASSEVPSLNEADPESQEISGRQNLPEVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGRIKKSDGSFRDVTGDIAAIEALVRKLSSRSVEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIQSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARTGTERAKRKATSLLEHLRVYGVNTSLYDYENLHITHQQDLYIEAELINHCCRFRMRSIREIWLTYFNRKSSLNQTARKQLDPVYQEKSSIWCICNAALHHVPFNQPLSILYSLLHQFSTTLIHVKSIHAQIIKNWVSTENYLASKLIRSYSDLGFLRPARKVFDQCSLPGTAVCNAMMAGFLRNHQHMEVPKLFKMMGSGDIEIDSYTCMFALKACTSLLDDEISMEIVRAVFRRGFHLHPYVGSSVVNFLVKCGYLDDARKVFDVMPEKDVVCWNSIIGGYVQEGLFKEAIQMFLEMIGGGLRPSPVTMVSLLKACGDSGLKELGTSSHGCVIALGMGNDVFVLTSLVYMYSNLGDTDNAALVFNGMSNRSLISWNAMISGYVQNGLIPESFALFRRLVQSGSGFDSGTLVSLIRGCSQTSDMENGRILHACIIRKGLESNIVLSTSIVDMYSKCCSTKLATIVFRRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLKKGRSVHGHLIRHGYAFDAVNVSALIDMYAKCGKIRSAEKLFNNGFHLKDVILCNTMIMGYGMHGHGHYALGVYDRMIEERLKPNQTTFVSLLTACSHAGLVEEGKALFNCIERDHNIKPQDKHYACLVDLLSRAGRLKEADALVKEMPFQPSTDVLEALLSGCRTHKNINMGIQIADRLISLDYLNSGIYVMLANIYAEAGRWESVNNIRGLMRMQGLKKVPGYSLIEVENLVHTFFASDDSHPRWSEIYELLENLRLEVEAEGYVPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPYGSLIRITKNLRVCVDCHTVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDYW 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02239 1515 Gene3D - 356 758 IPR011989 -
Spst3g02239 1515 Pfam E motif 1325 1387 IPR046848 -
Spst3g02239 1515 Coils Coil 149 169 - -
Spst3g02239 1515 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 458 500 IPR000225 GO:0005515
Spst3g02239 1515 SUPERFAMILY RING/U-box 276 351 - -
Spst3g02239 1515 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Spst3g02239 1515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1208 1242 IPR002885 -
Spst3g02239 1515 MobiDBLite consensus disorder prediction 213 234 - -
Spst3g02239 1515 FunFam Pentatricopeptide repeat-containing protein At4g14850 1060 1159 - -
Spst3g02239 1515 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 417 IPR000225 GO:0005515
Spst3g02239 1515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1106 1140 IPR002885 -
Spst3g02239 1515 CDD RING-Ubox_PUB 278 330 IPR045210 -
Spst3g02239 1515 Pfam DYW family of nucleic acid deaminases 1423 1515 IPR032867 GO:0008270
Spst3g02239 1515 FunFam Pentatricopeptide repeat-containing protein At3g58590 958 1058 - -
Spst3g02239 1515 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Spst3g02239 1515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 350 IPR013083 -
Spst3g02239 1515 Pfam Armadillo/beta-catenin-like repeat 407 445 IPR000225 GO:0005515
Spst3g02239 1515 Pfam Armadillo/beta-catenin-like repeat 489 527 IPR000225 GO:0005515
Spst3g02239 1515 SUPERFAMILY ARM repeat 376 653 IPR016024 -
Spst3g02239 1515 Pfam PPR repeat 1283 1306 IPR002885 -
Spst3g02239 1515 Pfam PPR repeat 806 831 IPR002885 -
Spst3g02239 1515 Pfam PPR repeat 1007 1036 IPR002885 -
Spst3g02239 1515 Pfam PPR repeat 1181 1201 IPR002885 -
Spst3g02239 1515 MobiDBLite consensus disorder prediction 244 264 - -
Spst3g02239 1515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1005 1039 IPR002885 -
Spst3g02239 1515 Pfam U-box domain 277 348 IPR003613 GO:0004842|GO:0016567
Spst3g02239 1515 MobiDBLite consensus disorder prediction 213 266 - -
Spst3g02239 1515 FunFam Pentatricopeptide (PPR) repeat-containing protein 1272 1434 - -
Spst3g02239 1515 NCBIfam pentatricopeptide repeat 1108 1141 IPR002885 -
Spst3g02239 1515 NCBIfam pentatricopeptide repeat 906 939 IPR002885 -
Spst3g02239 1515 NCBIfam pentatricopeptide repeat 1211 1243 IPR002885 -
Spst3g02239 1515 NCBIfam pentatricopeptide repeat 1007 1036 IPR002885 -
Spst3g02239 1515 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Spst3g02239 1515 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 857 957 - -
Spst3g02239 1515 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 864 1452 IPR046960 GO:0003723|GO:0009451
Spst3g02239 1515 FunFam Pentatricopeptide repeat-containing protein mitochondrial 1160 1271 - -
Spst3g02239 1515 Pfam PPR repeat family 903 950 IPR002885 -
Spst3g02239 1515 Pfam PPR repeat family 1207 1255 IPR002885 -
Spst3g02239 1515 Pfam PPR repeat family 1105 1153 IPR002885 -
Spst3g02239 1515 Gene3D Tetratricopeptide repeat domain 1177 1405 IPR011990 GO:0005515
Spst3g02239 1515 FunFam RING-type E3 ubiquitin transferase 556 654 - -
Spst3g02239 1515 FunFam RING-type E3 ubiquitin transferase 276 351 - -
Spst3g02239 1515 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 499 541 IPR000225 GO:0005515
Spst3g02239 1515 SMART arm_5 447 487 IPR000225 GO:0005515
Spst3g02239 1515 SMART arm_5 570 610 IPR000225 GO:0005515
Spst3g02239 1515 SMART arm_5 406 446 IPR000225 GO:0005515
Spst3g02239 1515 SMART arm_5 529 569 IPR000225 GO:0005515
Spst3g02239 1515 SMART arm_5 488 528 IPR000225 GO:0005515
Spst3g02239 1515 Gene3D Tetratricopeptide repeat domain 759 858 IPR011990 GO:0005515
Spst3g02239 1515 Gene3D Tetratricopeptide repeat domain 859 958 IPR011990 GO:0005515
Spst3g02239 1515 Gene3D Tetratricopeptide repeat domain 966 1060 IPR011990 GO:0005515
Spst3g02239 1515 Gene3D Tetratricopeptide repeat domain 1061 1164 IPR011990 GO:0005515
Spst3g02239 1515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 904 938 IPR002885 -
Spst3g02239 1515 FunFam RING-type E3 ubiquitin transferase 355 555 - -
Spst3g02239 1515 Pfam E+ motif 1392 1415 IPR046849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02239 Spst-Chr3 64795658 64806659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02239 496 656 U-box Gene Family AT1G23030 29.630 4.28e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02239 - - vra:106765914 1453.34