Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02236 ATGAGGAAGCCCAGTTCTGATATCAAAGACTTGAACAAAGGAGCTTGGTCCAAACAAGAGGACCAGAAACTCATAGATTATATCAACAAACACGGCGAGGTTTGTTGGCGTACACTCCCTAAGGCTGCAGGTTTACTTCGCTGTGGTAAAAGTTGTAGGCTGAGATGGATAAACTATCTACGGCCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCACGCGCTACTTGGCAACCGGTGGTCACTAATAGCTGGGAGATTGCCTGGACGTACAGATAATGAAGTGAAGAACTATTGGAATTCTCACATAAAAAGAAAGCTGATTAGCAAAGGTATTGATCCAAATAATCATCGATTAGATCATAAAGTCCCTTTCCTTCAGAATCCTCTCATGTCTGATGATAGTTCAGAACCCTTTGGCACGAAAGACGTCGATAAGAACGAGCCAAGTAAATCACCTCGGCATGTTTACCATTGTGGTGAAGTCTCGGATGATGCAAGTGGCGAGGCTCAGTCCTCATGTGCCCTTCCCGATTTAAACCTTGATCTCTCTATCGCCATTCCTTCACCTTCACACAGTACTTCTGTAAACAATCTAAAACCTTCTCACCAATCTTATTCGTCCAGAAAACTCTCTTTTGATTCTCCTTCAACACTTCTTCTGTTTCAGTAA 696 0.4267 MRKPSSDIKDLNKGAWSKQEDQKLIDYINKHGEVCWRTLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIKRKLISKGIDPNNHRLDHKVPFLQNPLMSDDSSEPFGTKDVDKNEPSKSPRHVYHCGEVSDDASGEAQSSCALPDLNLDLSIAIPSPSHSTSVNNLKPSHQSYSSRKLSFDSPSTLLLFQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02236 231 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 192 - -
Spst3g02236 231 FunFam MYB transcription factor 67 127 - -
Spst3g02236 231 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Spst3g02236 231 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Spst3g02236 231 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Spst3g02236 231 Gene3D - 5 66 - -
Spst3g02236 231 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Spst3g02236 231 FunFam MYB-related transcription factor 12 65 - -
Spst3g02236 231 CDD SANT 68 111 IPR001005 -
Spst3g02236 231 MobiDBLite consensus disorder prediction 146 163 - -
Spst3g02236 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Spst3g02236 231 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Spst3g02236 231 CDD SANT 15 60 IPR001005 -
Spst3g02236 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Spst3g02236 231 MobiDBLite consensus disorder prediction 138 163 - -
Spst3g02236 231 SMART sant 65 113 IPR001005 -
Spst3g02236 231 SMART sant 12 62 IPR001005 -
Spst3g02236 231 Gene3D - 67 131 - -
Spst3g02236 231 MobiDBLite consensus disorder prediction 198 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02236 Spst-Chr3 64198474 64199610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02236 2 196 MYB Transcription Factor Family AT4G38620 53.555 1.52e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g02236 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02236 K09422 - gmx:100814923 387.111