Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02207 ATGGTGAAGTTTCACTCGTTTGATGATCTGGTTGGTTTTATCGTCGTTCAGTTTAACCTGGTTTATTTCAAGCTAAATTATGATGTTGGAGCAGTTGATTTTTTGACAAATAGTCCAATACATGATAACTTTCTGTTGTCAAAACTATGGAATTTTGTCACCGAACTTGTCGCCCAATGTGCCCAAGTCTTGAAGACTAGGATTTCAATGCCCAAAGGGCCCGATTCTTTAACAAATGCTAAATATTTCTCCCTCTTATTCATAACTGTCAAAGTCCGAAAAATGTGGGATAACTTGATTCTGATGCAAGGTCAAAGGAGGACCGTTGGATCGTTCCCAACAATTATTAGTATGATGCAAGGGCCCAGCTCTAGTGGCACTGATACGAATCATCAATCTCCCTTGAATTATGTGCAAAATGAAGTAGATTTGCGATTTTCAGATTATAGGGGGTCTTTTGGTGAGGCTGCATGTTTACGTGGCACTGGTCATGATGTTCAAAGCTTCCGTGGTTGGAATTCTGGGGAATCTAGTTCTGGACTGAATCTGATCAACCAAGGCAATGGGGAAGATGTAAATTCAGAACATGGTTTGTCTTCTTCATATAATGCTACTACTGAAGATGGTCGCATGTATGAGGAAAGACAATTTGAACCAAATGGAGTAATTTTTCCTGTTAACTCAAATAATAATCTACATGGCAATCAATCTAGAGTTTACCCTTCCTTTTTGCAAGGTTCTAGTTCTAATCACATTACCCAAAATATTAGTCTAGATATGGGATGTGTTGCTAACGCTACTAATCATGGGAAGGGCAAAGAAGCTAGTAGTAGTGTTGATGACAACAATACTAGTGGAGTAGATAAAGAAAAGACATTGCTTGGTAGTGCTTCATGTCATGACACAGGAGCTTCATCTGAAACATCTGGATACATGGCTTGGGGTGATAGTGGTAGATCAAGCTCTTTTGTTAATTGGGGTCCTTCCTGCAAGAGAAAGGCTCATGAAGGTAGTTCTGGAAAACTGTGCTCAGGAGGAAGCTCAAGCACTCTTGTACAATCCAAAAATGGTTATTGGTCTACTACTGATCCTATTGATCCTAATGCTTCAAGCAGCTTGAGTGATATTACACCTTTGGAGGATATTCCTGTTCCAAGTCCTTCATTATTGCAGAATGTAAGAAATGAAGTGACACAAAAAGCTTCCAATGCATTTCCTTTGATAAGTATTGCAGAAAATGTGCAAAGGCCTGTAAGAAACTTCCATAGAAGAATGAGCCAACTACAGGATCAGGAATCTGTACCTCTCAATTTACCATCTATAGGGAGTTTTAGGCATCATAGTCGTTCTTCTCTGAATGAAATACCTGGCTCTCACTCACTTAATGATTCATTGGAATTGAGGTTAACAGCTGGAGTAACAAGTCCTAATTCTGGTACTTCTTTAAACCAATCACCAGCCCAGCGTATCCTTTCTTTTCCTTGGACCACAACTGCCAATCCTAGAGGGGCCAGATCTTCTTCTTCTTATATCTCTGGAGAAAGAGTTCTTCGAGAAGATGTTAATTTGAGAATGTTTCCCAGCGGTAGTACTGAGCACCCCATGAATGTTCCTGCATCTTCAGAATATGAACCTACAGGTCGCCATACACCATCTGCTAATGTTAACTATTCTGGAGGTGTACCTCCTCCATCCTGGATTGGATCTAGTTCAAATGTTCACTCTTCACCTAACTCTGGCTTGAATTTTAATCGTGAAGTCCCAGCTGAAATGATGCAGAGTGTGTCAGATTTCAATCCTTGGTCCTTTTTTGCATCAATTAGCTCTGCATCTAGTGTTCCTAATGGCCATTCTATCCCATCTTCTTCTGGTCCTCCCTCATATACCCAGGGTTCTAGCAACAACCAATCCTATCTAAGAACAACATTGTTAATGGAAAGGGCTGGTGATGTTCCCTTAAGACCCCTTTCACTGCAAGCATTAACCTTTGACAATGAGGGGAGACGACGACTACTATCGGAGATTCGCCAGGTCTTGATGGCAATTCGGAGGGGTGAGAACTTACGTCCCGAGGACTATATGTTATTGGACCCTTTCCTATATCATGGCCTGGCTGAAATATATGACAGACATAGAGAAATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGTATAGGAGATGTTAGCACTGGATTGAGTGAGGATGTCATTGATAAGTTGATGAAACAACGACTTTGCATGGCAATCAAGACAGAGTCTTCTACCCTTTTGGAACCTTGTTGTATTTGTCAGGAGGGATTTGGTTATGGAGAGATTGTTGGATCACTGGATTGTGGGCATGAGTTTCACAGTGCCTGCATCAGGCAATGGCTAATGCAGAAGAATATGTGCCCCATTTGCAAAACAACAGCCTTAGCTACATGA 2448 0.4114 MVKFHSFDDLVGFIVVQFNLVYFKLNYDVGAVDFLTNSPIHDNFLLSKLWNFVTELVAQCAQVLKTRISMPKGPDSLTNAKYFSLLFITVKVRKMWDNLILMQGQRRTVGSFPTIISMMQGPSSSGTDTNHQSPLNYVQNEVDLRFSDYRGSFGEAACLRGTGHDVQSFRGWNSGESSSGLNLINQGNGEDVNSEHGLSSSYNATTEDGRMYEERQFEPNGVIFPVNSNNNLHGNQSRVYPSFLQGSSSNHITQNISLDMGCVANATNHGKGKEASSSVDDNNTSGVDKEKTLLGSASCHDTGASSETSGYMAWGDSGRSSSFVNWGPSCKRKAHEGSSGKLCSGGSSSTLVQSKNGYWSTTDPIDPNASSSLSDITPLEDIPVPSPSLLQNVRNEVTQKASNAFPLISIAENVQRPVRNFHRRMSQLQDQESVPLNLPSIGSFRHHSRSSLNEIPGSHSLNDSLELRLTAGVTSPNSGTSLNQSPAQRILSFPWTTTANPRGARSSSSYISGERVLREDVNLRMFPSGSTEHPMNVPASSEYEPTGRHTPSANVNYSGGVPPPSWIGSSSNVHSSPNSGLNFNREVPAEMMQSVSDFNPWSFFASISSASSVPNGHSIPSSSGPPSYTQGSSNNQSYLRTTLLMERAGDVPLRPLSLQALTFDNEGRRRLLSEIRQVLMAIRRGENLRPEDYMLLDPFLYHGLAEIYDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVIDKLMKQRLCMAIKTESSTLLEPCCICQEGFGYGEIVGSLDCGHEFHSACIRQWLMQKNMCPICKTTALAT 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02207 815 Pfam Ring finger domain 768 809 IPR001841 -
Spst3g02207 815 SMART ring_2 768 808 IPR001841 -
Spst3g02207 815 SUPERFAMILY RING/U-box 767 812 - -
Spst3g02207 815 ProSiteProfiles Zinc finger RING-type profile. 768 809 IPR001841 -
Spst3g02207 815 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 326 813 IPR045191 GO:0061630
Spst3g02207 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 730 813 IPR013083 -
Spst3g02207 815 MobiDBLite consensus disorder prediction 614 634 - -
Spst3g02207 815 MobiDBLite consensus disorder prediction 526 559 - -
Spst3g02207 815 FunFam E3 ubiquitin-protein ligase MBR2 735 813 - -
Spst3g02207 815 MobiDBLite consensus disorder prediction 270 288 - -
Spst3g02207 815 MobiDBLite consensus disorder prediction 269 288 - -
Spst3g02207 815 MobiDBLite consensus disorder prediction 533 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02207 Spst-Chr3 61811885 61817778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02207 102 815 C3H Transcription Factor Family AT2G15530 34.748 1.38e-92 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02207 - K19041 gmx:100809024 1082.01