Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02206 ATGGCCTTGATATTAGAAGATGAAGATTTTCATGATATGAACTTCTTATTGGAAAACCATTCATGGGATCCCTCCAATTCTTCTGCTAACTGGCGTGAAAGTAAAGAAAACACCAACTCAAAAAACCAGAAGAATGAAAAGGATGAAGCTCTCATGAACAAGAACGCAATTCGAGACCCGAGCAATGTTGCTGCCAGTGGTGAAGGAAAAGGTGAAAAGAGTCGCGAATCTGATGAACATGAAATGCATATATGGACTGAGAGAGAAAGGAGAAAAAGAATGAAAAACATGTTCAGTAGTCTTCATGCTATGCTTCCCCATCTTCCTTCTAAGGTGGATAAATCAACGGTTGTGGATGAAGCGGTGAGCTACATAAAAAATCTTCAGGAAACCGTGGAAAAGCTAGAGAAACAGAAACAAGAAAGGGTTCAATATAGCACCGCGTTTGGGTATAAGTCATCATCATCAACGTTCGTCACTGCTCAGGGATTTTCTTCCAATAACAACTTTTCCAACGCGATGATGGGAGCTTCTTCAAACGCGCTTCCAGTAAGTTTTGATAAAACGTGGACCTCTTCAAACATGGTCTTGAGTGTTTGTGGAGATGAGGCCCAATTCTGCGTCTGTGCGGCCCACAAGCCCGGGCTCATGTCCAGCATAGCTTTTGTGCTCGAGAAGTACGAGATAGAGCTCGTATCTGCCAACATTTCTTGCATTGGGAATGGAAATGCAATCATGATTCAAGTTCATGGGAAACGAGCTTCACATCAGTTTCTAAATGCAAATTCAGTGGAAGAAATTTACAGGCAAGCTGCGGGAGAGATTATGCTTTGGATCGCTTAA 843 0.4223 MALILEDEDFHDMNFLLENHSWDPSNSSANWRESKENTNSKNQKNEKDEALMNKNAIRDPSNVAASGEGKGEKSRESDEHEMHIWTERERRKRMKNMFSSLHAMLPHLPSKVDKSTVVDEAVSYIKNLQETVEKLEKQKQERVQYSTAFGYKSSSSTFVTAQGFSSNNNFSNAMMGASSNALPVSFDKTWTSSNMVLSVCGDEAQFCVCAAHKPGLMSSIAFVLEKYEIELVSANISCIGNGNAIMIQVHGKRASHQFLNANSVEEIYRQAAGEIMLWIA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02206 280 MobiDBLite consensus disorder prediction 21 36 - -
Spst3g02206 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 128 IPR011598 GO:0046983
Spst3g02206 280 Pfam Helix-loop-helix DNA-binding domain 82 129 IPR011598 GO:0046983
Spst3g02206 280 CDD bHLH_AtbHLH_like 83 136 IPR045239 -
Spst3g02206 280 MobiDBLite consensus disorder prediction 21 82 - -
Spst3g02206 280 Coils Coil 118 148 - -
Spst3g02206 280 Gene3D - 76 148 IPR036638 GO:0046983
Spst3g02206 280 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 32 279 IPR044278 GO:0003700|GO:0006355|GO:0009960
Spst3g02206 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 141 IPR036638 GO:0046983
Spst3g02206 280 MobiDBLite consensus disorder prediction 37 54 - -
Spst3g02206 280 SMART finulus 86 134 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02206 Spst-Chr3 61796491 61797704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02206 76 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 39.419 5.29e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g02206 HLH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02206 - - gmx:102665879 379.793