Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02205 ATGGCAGAAGATGAATATTTACTTGATATGGACTTCCCATTGGGAAACCATATAGGGACCTCTTCAAGTTCTAATCACTCTAGTGAAAGAAAGGAGAAGAAGAAGCCATGGAACCAACAACAACAGGGAGCCCTCATGAATAAGAAGCAAAATCCAGATATCGGTGGTGAAAATGAGAAGAAAATTATTGCTAGTGGTGAAGGGACATGTCTGGAAATAAATAATGAAATGCATCCATCGATTGAAAGAGAAAGACGAAAGAAAATGAAAGAAATGTTTGAGGATCTTAGTGGTTTACTCCCACAACTTCCTTCCAAGGTTGATAAAGCAACCATAATCAATGAAGCAGTGAACCACATAAAAGTTCTGCAGGAAACCCTGGAAAAGCTAGAGAGAAAGAAGCAAGAAAGGGCACAAGATGGTCTGAAACAGATTATGGGAACCACAACTTCAGGTGCAGTTTCAGTGTCTGGGAAGCAGAAAGTAGCTTTTGAGAAAACCTGGGCTGCTTCAAACATGGTGCTCAACATTCGTGGAAATGAAGCTCAGTTCTCCATTTGCTCGGTTCATAAGCCAGGACTCATGACAAACATTGCTTCTGTGCTGGAGAAGCACAACATAGAACTCATATCTGCCACCATTTCAGCCAATGGAATTGGAAATACATGCATGATTCAAGTCCATGGAAAACAAGCTTGTGATGGAAATTCAAGCGAGGAAACTTACAGGAAAGCTGCTGAAGAGATTATGCCATGGATTGCCTAA 765 0.4092 MAEDEYLLDMDFPLGNHIGTSSSSNHSSERKEKKKPWNQQQQGALMNKKQNPDIGGENEKKIIASGEGTCLEINNEMHPSIERERRKKMKEMFEDLSGLLPQLPSKVDKATIINEAVNHIKVLQETLEKLERKKQERAQDGLKQIMGTTTSGAVSVSGKQKVAFEKTWAASNMVLNIRGNEAQFSICSVHKPGLMTNIASVLEKHNIELISATISANGIGNTCMIQVHGKQACDGNSSEETYRKAAEEIMPWIA 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02205 254 CDD bHLH_AtbHLH_like 78 131 IPR045239 -
Spst3g02205 254 Gene3D - 74 145 IPR036638 GO:0046983
Spst3g02205 254 MobiDBLite consensus disorder prediction 1 58 - -
Spst3g02205 254 Pfam Helix-loop-helix DNA-binding domain 76 124 IPR011598 GO:0046983
Spst3g02205 254 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 23 253 IPR044278 GO:0003700|GO:0006355|GO:0009960
Spst3g02205 254 SMART finulus 79 129 IPR011598 GO:0046983
Spst3g02205 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 123 IPR011598 GO:0046983
Spst3g02205 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 136 IPR036638 GO:0046983
Spst3g02205 254 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02205 Spst-Chr3 61789640 61792956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02205 74 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 30.380 4.30e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g02205 HLH 7.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02205 - - pvu:PHAVU_003G048100g 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02205 3 61789640 61792956 Spst3g02205 3 61789640 61792956 ECH