Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02198 ATGGCTACCCCAAGCAAATCAACACCAACAACATCTTCAGACACTTTGGAACAGAAGGGGAAGACTATGGCTGAGTCAAATGCAACCATTCTTCAATGTCCTTTAAACCAGCAACACCATAGCTCCTTAGATGGCCCAGTAGCAATCCTTTGGGATATTGAGAATTGTCCTGTTCCAAGTGATGTACGCCCTGAAGATGTAGCAGGTAATATAAGAATGGCTTTACGGGTGCACCCAGTAATTAAAGGAGCTGTTATGCTGTTTTCTGCTTATGGGGATTTCAATTCTTTCCCTAGGCGACTTAGAGAAGGCTGTCAGAGAACTGGTGTTAAACTTATTGATGTTCCAAATGGGAGAAAAGATGCTGCTGACAAAGCTATCTTGGTTGACATGTTCTTATTTGCTCTTGACAATCCTCCACCATCCTCTATTATGCTTATATCTGGAGATGTTGATTTTGCACCAGCACTACATATTCTTGGTCAACGAGGATATACTGTTATTCTTGTCATCCCTGGTGGGGTGGGTGTTTCATCTGCCCTATGCAATGCCGGTAAATTTGTCTGGGACTGGCCTAGCGTGGCACGTGGGGAAGGCTTTGTGCCCCCCTCAAAAGCTTTAGTACCAACCCGGGCAGGTCCAATTGAGCTTTCTGGATATTTGATGGGGTGCCATATCAATGACAATTCTGATGGATTAAATGAAGAAGAAGCAATAGTTTATAGAGGTATGTCACAAAGTTATTTCAACTCAAGGGAATTGTCATTGGTGTCACAATCACTGTCTGAATACAACTGTGGCACCCCGAACATGACTTGCATGCCAACAACTATGAGATCACACAGCCTTCCATCTGTATTCAATGATGTTCAAGGAGGGTCTATGATGCCTTCCAGTGAACATAACGAATGCCAGTTATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGGCAGCTGGTAAGGTTGCTTGAACTTTTTGGAGGATGCCTGCCTCTGGCCCGAGTTCCAGCAGAGTACCAGAAAGTTAATGGGAGACCTCTTTATGTAGCTGAATATGGGGCAGTAAAGTTGGTCAATCTTTTCAAGAAGATGGGTGATGCCATGGCTGTGGAAGGGAAAGGGAACCGTAAATTTGTGTATCTCAGAAACTGGAAGGCAGGTCCAAGTGCTCCTCCTCTCTCTCTGGCAAAGAAAGATAAGAAGGGAAAGGGAGCCCAGGAAGACAATGCGAATGTTGTCACTGGTGGATGCTCTTCAGATGAGTTCTCAGATGAAGAAAGAGTAGTGGTAGAAGAACAAGATGAAAGAAGTTGCACAGGCAAAGGCAATCAGGGGACAGCGGCCAAATTTGAAGTTGATGACTCTGTTATTGAGCACTTTAAGTATGAGCTGCAAGAGATTCTAGTGAGCTATTCTTGTCGAATATTCCTTGGTTGTTTTGAGGCTATATACGAGCAGCGATACAAGAAACAGCTGGAATATCAGAGATTTGGTGTGGAAAAGTTGGAAGATTTGTTTGAGAAAGTGAGTGATGTGGTGGTATTGCATGAGGAACCAGTAACCAAGAGGAAGTTCCTGGCTGCTGTGGATGGTTAG 1599 0.4428 MATPSKSTPTTSSDTLEQKGKTMAESNATILQCPLNQQHHSSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMLFSAYGDFNSFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPGGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKALVPTRAGPIELSGYLMGCHINDNSDGLNEEEAIVYRGMSQSYFNSRELSLVSQSLSEYNCGTPNMTCMPTTMRSHSLPSVFNDVQGGSMMPSSEHNECQLWVQPGDLNGLKGQLVRLLELFGGCLPLARVPAEYQKVNGRPLYVAEYGAVKLVNLFKKMGDAMAVEGKGNRKFVYLRNWKAGPSAPPLSLAKKDKKGKGAQEDNANVVTGGCSSDEFSDEERVVVEEQDERSCTGKGNQGTAAKFEVDDSVIEHFKYELQEILVSYSCRIFLGCFEAIYEQRYKKQLEYQRFGVEKLEDLFEKVSDVVVLHEEPVTKRKFLAAVDG 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02198 532 CDD PIN_limkain_b1_N_like 46 172 - -
Spst3g02198 532 PANTHER LIMKAIN B LKAP 24 495 IPR024768 GO:0005777|GO:0010468
Spst3g02198 532 ProSiteProfiles OST-type HTH domain profile. 312 384 IPR025605 -
Spst3g02198 532 CDD LOTUS 313 382 - -
Spst3g02198 532 CDD LOTUS 458 520 - -
Spst3g02198 532 ProSiteProfiles OST-type HTH domain profile. 457 531 IPR025605 -
Spst3g02198 532 Pfam NYN domain 46 185 IPR021139 GO:0004540
Spst3g02198 532 Gene3D - 312 381 IPR041966 -
Spst3g02198 532 Gene3D - 454 524 IPR041966 -
Spst3g02198 532 MobiDBLite consensus disorder prediction 1 23 - -
Spst3g02198 532 Gene3D - 41 192 - -
Spst3g02198 532 MobiDBLite consensus disorder prediction 392 411 - -
Spst3g02198 532 Pfam OST-HTH/LOTUS domain 458 520 IPR025605 -
Spst3g02198 532 Pfam OST-HTH/LOTUS domain 315 379 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02198 Spst-Chr3 61536285 61537883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02198 43 197 C2H2 Transcription Factor Family AT5G61190 41.935 3.02e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02198 - - gmx:100818186 963.37