Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02179 ATGTCACTCCGTGTAAGATCGGTGTGCACAGCTGGACCTTACTCTGCCACGTCACCCCAAACCGTATATAACCCAATCCCACCCGATCATCCTCGCTCAGTTCCCAAAAACCTTCGACGCGCGAAAAGAAAAGAGAGACCTCCATTTGACTCCACTCCAATGTCTTCCTCCTCCTCCTCCTTCTCCCCCGCCACGCTCACCACCGAGCAAGAACTCTCCGTCATCGTCGCCGCGCTTACCAACGTCGTCGCCGGCTCCACCTCCTCCGATGCTGTCTCCCTCCCGGACTTCCGCCTCCCTCACACCTCCCAGCCTCTCGCCGCAACCACCTTCGACCGGATAGTCCCGCCGCCCACCACGTGTCGCGAGTGCAACATCGCTGGCTGCTTGGGCTGCAACTTCTTCCCCGAGGAGAAAAAGAAACAAAAGAGGGCCAAGAAGAAATACAGAGGCGTCAGGCAGAGACCCTGGGGCAAGTGGGCGGCGGAGATTCGTGACCCTCGCCGTGCGGCCCGGGTCTGGCTCGGAACTTTCAACACGGCCGAGGAGGCCGCCCGGGCCTACGACAAGGCCGCCATCGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTTCCCTTAGTGGACGAGTCCTTAAGCATGCAGCAGAGCGAGCCAGAGAGGGTTGCAGCGGAAGAGCAGATAAAGAACGAGAATCTCAACCACGGCATGGAAATGAACAAGGATGCCGAATTCTGGGACAGGATTTGGGAAGCGGATTTTCATCAGCTGATGATGGAATTTACTGGAGATTCTTCCGACTCCGCCACTGGGAACACCCTTAGTGGAGCCCACCGTGCATCACCTGAAGAGGTTAGATGTTGTCGTGTGGCGTGCACTGGGAGAGTGGCTGCTGATTCTCTTACCGAGTCCTAA 912 0.58 MSLRVRSVCTAGPYSATSPQTVYNPIPPDHPRSVPKNLRRAKRKERPPFDSTPMSSSSSSFSPATLTTEQELSVIVAALTNVVAGSTSSDAVSLPDFRLPHTSQPLAATTFDRIVPPPTTCRECNIAGCLGCNFFPEEKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEEAARAYDKAAIEFRGPRAKLNFPLVDESLSMQQSEPERVAAEEQIKNENLNHGMEMNKDAEFWDRIWEADFHQLMMEFTGDSSDSATGNTLSGAHRASPEEVRCCRVACTGRVAADSLTES 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02179 303 Gene3D AP2/ERF domain 147 207 IPR036955 GO:0003700|GO:0006355
Spst3g02179 303 MobiDBLite consensus disorder prediction 1 63 - -
Spst3g02179 303 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677
Spst3g02179 303 CDD AP2 149 205 IPR001471 GO:0003700|GO:0006355
Spst3g02179 303 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Spst3g02179 303 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
Spst3g02179 303 Pfam AP2 domain 148 197 IPR001471 GO:0003700|GO:0006355
Spst3g02179 303 PANTHER DNA-BINDING DOMAIN 103 231 IPR044808 GO:0003700|GO:0009873
Spst3g02179 303 SMART rav1_2 148 211 IPR001471 GO:0003700|GO:0006355
Spst3g02179 303 FunFam Ethylene-responsive transcription factor 2 147 206 - -
Spst3g02179 303 ProSiteProfiles AP2/ERF domain profile. 148 205 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02179 Spst-Chr3 60821657 60824909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02179 66 213 AP2-EREBP Transcription Factor Family AT4G34410 47.283 9.68e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g02179 AP2 9.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02179 - - gsj:114420690 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02179 3 60821657 60824909 Spst3g02179 3 60821657 60824909 ECH