LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g02159	GTTGTGTCTGCCAAGGTCATTCGGAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTTGTAGAGTTCTACTCTCGTGCGACGGCTGAGAAAGTCTTGCAGAACTATAATGGTACCATGATGCCAAACACGGATCAGGCATTTCGTCTGAATTGGGCCACATTCAGTGCTGGCGATAGGCGTTCTTCTGATGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATTGATGTTACTGATGCTATGTTACAAGAGACTTTTGCTAGCAGATTTTCGTCTATCAAGGGAGCAAAAGTTGTTATTGATTCTAATACTGGCCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGGGATGAAAATGAGAGAACAAGAGCAATGACTGAAATGAATGGCGTTTATTGTTCTAGTAGGCCCATGAGAATAGGTGTTGCAACTCCCAAGAAAACTTACGGTTATCAGCAACAATATTCTTCTCAAGGTGGACACTCGGCTAATGGTGCTGTGGCCCAAGGTTCTCAAGAAGGGGATTCAAACAACACTACTATATTTGTTGGAGGGCTTGATTCTGATATCAGTGACGAGGATCTCAGACAACCATTTTTGCAATTTGGAGAGGTTGTCTCTGTGAAAATTCCAGTGGGGAAAGGTTGTGGATTTGTTCAATTTGTGGACAGAAAGAATGCCGAGGAAGCAATTCAGGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGCCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAAGTGATCCCAATGGAGGCCATTATGGTGGTGGTCAGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATATAGCCATGCAACCTGCTGCCGCTGCAATTCAAGGGGCTTCCTGA	906	0.4492	VVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQETFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQGGHSANGAVAQGSQEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFVDRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRSDPNGGHYGGGQGYGGHGFAVRQNQDIAMQPAAAAIQGAS	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g02159	301	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	71	140	IPR000504	GO:0003723
	Spst3g02159	301	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	1	44	IPR000504	GO:0003723
	Spst3g02159	301	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	184	247	IPR000504	GO:0003723
	Spst3g02159	301	PANTHER	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	1	258	-	-
	Spst3g02159	301	SMART	rrm1_1	70	144	IPR000504	GO:0003723
	Spst3g02159	301	SMART	rrm1_1	183	250	IPR000504	GO:0003723
	Spst3g02159	301	FunFam	Polyadenylate-binding protein RBP47	165	281	-	-
	Spst3g02159	301	CDD	RRM2_SECp43_like	68	147	-	-
	Spst3g02159	301	Gene3D	-	169	286	IPR012677	-
	Spst3g02159	301	CDD	RRM1_SECp43_like	1	56	-	-
	Spst3g02159	301	Gene3D	-	1	54	IPR012677	-
	Spst3g02159	301	Gene3D	-	56	164	IPR012677	-
	Spst3g02159	301	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	69	148	IPR000504	GO:0003723
	Spst3g02159	301	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	1	55	IPR000504	GO:0003723
	Spst3g02159	301	SUPERFAMILY	RNA-binding domain, RBD	176	279	IPR035979	GO:0003676
	Spst3g02159	301	FunFam	Polyadenylate-binding protein RBP47B	56	159	-	-
	Spst3g02159	301	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	182	254	IPR000504	GO:0003723
	Spst3g02159	301	MobiDBLite	consensus disorder prediction	253	275	-	-
	Spst3g02159	301	SUPERFAMILY	RNA-binding domain, RBD	1	149	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g02159	Spst-Chr3	60166332	60169763	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst3g02159	1	253	Eukaryotic Initiation Factors Gene Family	AT2G23350	29.434	8.53e-23	96.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g02159	-		-	gmx:100798089	519.62