Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02123 ATGGTGGACGGTTTCATTGTTTGCATTGATCGGATTATAGCCTCCACGGCCTGTTTTGGACCAGTCGATGCAAGAAACTTTGATGATGGAGTTGATCCTATAAAACCCGTTTCTAACAATGCTGGAGAAGGGTGCTCCTCTTCTCCAAACAAGTACGATGATGATGATATTGTTGTTGAGTGTAGAATATGCCAGGAAGAAGATCAAGTCCAAGCCATGGAAGCACCTTGTTCTTGTAATGGCACTCTCAAGTTTGCTCATAGGAAATGTATCCAGCGATGGTGCAATAAGAAAGGAAATACGATATGTGAAATCTGTAATCAGGTTGGGGCTTTTCCCAACTCATTCATGGTGTTTTCTCTTCATGAGTTGTCTAAATTTTAA 384 0.4115 MVDGFIVCIDRIIASTACFGPVDARNFDDGVDPIKPVSNNAGEGCSSSPNKYDDDDIVVECRICQEEDQVQAMEAPCSCNGTLKFAHRKCIQRWCNKKGNTICEICNQVGAFPNSFMVFSLHELSKF 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02123 127 Pfam RING-variant domain 61 106 IPR011016 GO:0008270
Spst3g02123 127 SUPERFAMILY RING/U-box 59 108 - -
Spst3g02123 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 115 IPR013083 -
Spst3g02123 127 SMART ringv_2 60 107 IPR011016 GO:0008270
Spst3g02123 127 ProSiteProfiles Zinc finger RING-CH-type profile. 53 113 IPR011016 GO:0008270
Spst3g02123 127 CDD RING_CH-C4HC3_MARCH 61 107 - -
Spst3g02123 127 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 109 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02123 Spst-Chr3 59007643 59008733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02123 53 109 C3H Transcription Factor Family AT2G37950 42.188 2.01e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02123 - - gmx:100812120 176.407