Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02117 ATGAACGGGGCCGTTGATTCCGCGCTTTTCGCTTTTCTATTTCCCTCTCTTTGGGAGATCAAAGTCGCCGTCGCCGCCTCTGTCTTCGTCATAATCGCCTATCGCTTCTTCGCCGTCCGAACCGGACACCTCCGAGCCGATCCGTCGCTTCCCGACACCGCCGTTGATGTCGCCGACGACAAAGACAAGATAGGGCTGCCTAAAGTGGATTCTCAAGCCAGTTCAGCCTACCTCATCAAGTTAGAACTGTTGGCTGCTAAGAATCTTGTTGGTGCAAACTTAAATGGCACATCAGATCCGTATGCTATCATTACATGTGGCAATGAAAAGCGATTCAGTTCCATGGTCCCTGGTTCAAGAAATCCAATGTGGGGCGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTTCAGATCAATGTCACAATTTATGACTGGGATATAATTTGGAAAAGTGCAGTTCTTGGTTCAGTGACTGTTCCAGTTGAGAGTGAAGGTCAGACTGGTGCAGTGTGGCATACTTTGGATAGTCCATCAGGGCAGGTTTGTCTCCATATAAAAACAATAAAACTGTCTGGAACCAGGATAAATGGTTATGGAGGAGCCAACCCTCGAAGAAGGGTCCCAACCTTGGAAAGACAGGGGCCCACTGTAGTCCATCAAAAGCCAGGGCCTCTTCAGACAATATTTTCTCTTCATCCAGACGAGGTTGTTGATCATAGTTATTCTTGTGCACTTGAGAGGTCATTCTTGTACCATGGTCGTATGTATGTCTCAGCATGGCACATTTGTTTCCATTCCAATGTGTTCTCAAAGCAAATGAAGGTGCTTATTCCATTTGAAGATATAGATGAGATTCGAAGGAGTCAACATGCATTCATTAATCCTGCTATAACAATTATTCTTCGCATGGGTGCTGGTGGACATGGTGTCCCTCCTTTGGGAAGTCCTGATGGTAGGGTACGATATATGTTTGCATCATTTTGGAACAGGAATCATGCATTCAGAAATCTGCAGCGTGCAGCTAAGAATTTCCATGAAATGTTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAGCAGCGTGCACATAGCAGTTCTGTTAGAGGAAATAAGCTACTGGAAAAGGTTCCTGAAGAAAGCATGTCAAAAACTAGAAAACTTCCACATTTTATCAAAGAAGAGGCTTTAGTTGGTATATACAATGAAGTTTTTCCCTGCACAGCTGAGCAGTTTTTTAATTTATTATTAAATGACGGTTCAAATTTTACTAGCAAATATCGTTCAATAAGAAAGGACACTAATCTTGTGATGGGCCAGTGGCATACGGCAGATGAATACGATGGTCAAGTCCGGGAGATAACCTTCAGATCACTCTGTAACAGCCCTATGTGCCCTCCAGATACGGCCATGACAGAGTGGCAACATCATGTTCTATCACCAGACAAAAGAATCCTGGTGTTTGAAACTGTGCAGCAGGCACATGATGTTCCATTTGGATCGTATTTTGAGGTACACTGTAAATGGAGCTTGGAGACAATTAATGAGAGCTCATGTACTCTGGACATAAAAGTGGGAGCACATTTCAAGAAATGGTGTGTTATGCAATCCAAAATAAAGTCAGGGGCAGTCAATGAGGTTAGTAGATCTTTCGTTGACAAAGTTATTTCATACAGTAGTTCTAAGTCACAGTACAAGAAAGAAGTTGATGTCATGTTAGATGTTGCGCGATCATTCATAAAATCACATACTTTTTCTAATGACGAGGATGGCGAGGTTTCTTCGCTCGTGACCCTGGAAAGCTAA 1806 0.4324 MNGAVDSALFAFLFPSLWEIKVAVAASVFVIIAYRFFAVRTGHLRADPSLPDTAVDVADDKDKIGLPKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLHIKTIKLSGTRINGYGGANPRRRVPTLERQGPTVVHQKPGPLQTIFSLHPDEVVDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVLIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFHEMLEAEKKENAESEQRAHSSSVRGNKLLEKVPEESMSKTRKLPHFIKEEALVGIYNEVFPCTAEQFFNLLLNDGSNFTSKYRSIRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLSPDKRILVFETVQQAHDVPFGSYFEVHCKWSLETINESSCTLDIKVGAHFKKWCVMQSKIKSGAVNEVSRSFVDKVISYSSSKSQYKKEVDVMLDVARSFIKSHTFSNDEDGEVSSLVTLES 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02117 601 SMART C2_3c 78 174 IPR000008 -
Spst3g02117 601 PRINTS C2 domain signature 94 106 IPR000008 -
Spst3g02117 601 PRINTS C2 domain signature 139 147 IPR000008 -
Spst3g02117 601 PRINTS C2 domain signature 118 131 IPR000008 -
Spst3g02117 601 Pfam GRAM domain 227 295 IPR004182 -
Spst3g02117 601 MobiDBLite consensus disorder prediction 352 371 - -
Spst3g02117 601 Pfam C2 domain 80 174 IPR000008 -
Spst3g02117 601 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 77 188 IPR035892 -
Spst3g02117 601 ProSiteProfiles VASt domain profile. 396 584 IPR031968 -
Spst3g02117 601 ProSiteProfiles C2 domain profile. 60 175 IPR000008 -
Spst3g02117 601 Pfam VAD1 Analog of StAR-related lipid transfer domain 400 545 IPR031968 -
Spst3g02117 601 Coils Coil 335 362 - -
Spst3g02117 601 Gene3D C2 domain 63 192 IPR035892 -
Spst3g02117 601 Gene3D - 225 344 IPR011993 -
Spst3g02117 601 CDD C2 79 175 - -
Spst3g02117 601 FunFam BAG-associated GRAM protein 1 isoform X2 225 344 - -
Spst3g02117 601 SMART gram2001c 224 290 IPR004182 -
Spst3g02117 601 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 6 593 IPR044655 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02117 Spst-Chr3 58917712 58928850 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02117 67 163 C2H2 Transcription Factor Family AT4G21160 23.711 1.15e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02117 - - gmx:100789923 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02117 3 58917712 58928850 Spst3g02117 3 58917712 58928850 ECH