Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02086 ATGGTTCATTCCTTCTATGACAAAAGCTCTTCTTCTTCTGGCTCTGATATTTCAGGGTTGTTCAATCCCTCTTTGCAAAGCCCTGGAGCTTTCAATGGTGTTCTTGTGAGGGGTGGCTTGTCATCATCGAATTCTTTGGTTTATGAGAGTGAGAAGGGAGAGCTGGTGAAGTGCCCTTCAGCTACAAGGGTCGGGAAGAATGAGATTTGTGAGGCCAAAGCTTTGGCTGCTTTGAAGAATCATAGTGAAGCAGAGAGGAGGAGGAGGGAGAGAATAAACGGTCATCTTGCTACGCTACGTGGCCTTGTACCATCCACTGAAAAGATGGATAAAGCTACTTTATTGGCTGAAGTGATTAGCCAAGTGAAGGAACTGAAGAAAACTGCAGTGGAAGCATGCAAGGGTTTTCTAATCCCAATGGATGCTGATGAAGTGAAAGTCGAACCATGTGATGGATCCATGTCTCATAGTGCAACCATTTGCTGTGATTTCCGACCTGAAATACTATCTGACCTAAGACACACCCTTGATTCCCTTCCACTGCATCTAGTGAAGGCAGAAATTTCAACTTTGGCAGGAAGAATGACGAATGTATTTGTCTTTACGTGTTGCAAAGGGAACAGTCATAATGATATTGAGGCATGCCAATCTCTTGTAAGAACTGTTCACCAAGCACTATGTTCTGTACTGGATAAGGCTTCTGCCTCACTTGAGTTCTCACCCAGAACATCACATGCCAACAAGAGGAGAAGACTATGCTTTATTGAAACATCCACTTCTTCATGCACCCATGAGTCCTGTTTGTGTTGA 810 0.4395 MVHSFYDKSSSSSGSDISGLFNPSLQSPGAFNGVLVRGGLSSSNSLVYESEKGELVKCPSATRVGKNEICEAKALAALKNHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLAEVISQVKELKKTAVEACKGFLIPMDADEVKVEPCDGSMSHSATICCDFRPEILSDLRHTLDSLPLHLVKAEISTLAGRMTNVFVFTCCKGNSHNDIEACQSLVRTVHQALCSVLDKASASLEFSPRTSHANKRRRLCFIETSTSSCTHESCLC 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02086 269 Gene3D - 73 132 IPR036638 GO:0046983
Spst3g02086 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 128 IPR036638 GO:0046983
Spst3g02086 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 125 IPR011598 GO:0046983
Spst3g02086 269 SMART finulus 82 131 IPR011598 GO:0046983
Spst3g02086 269 CDD ACT_UUR-ACR-like 159 226 - -
Spst3g02086 269 Pfam Helix-loop-helix DNA-binding domain 80 125 IPR011598 GO:0046983
Spst3g02086 269 PANTHER TRANSCRIPTION FACTOR BHLH30 40 256 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02086 Spst-Chr3 57328341 57331231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02086 63 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.564 5.16e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g02086 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02086 - - gmx:100804756 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02086 3 57328341 57331231 Spst3g02086 3 57328341 57331231 ECH