Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02082 ATGGACTTCTCCAAGAAGCGCAAAACTGAAGAGAACGGCGACGCTGATTCTCCCTCGTCACAACCCTCCCCCCCATCTCCCACTGCCACCGTCACCACCACCGCCCCCCTCGCCGCCGAAGACATCCGCAAGATCTTGCGCCCGTTCTCCCAGGAACAACTCCTTGACCTCCTCCAATCGGCGTCGCTCCGCCACCCCGACGTCCTTGACGCTGTGCGCGCCGTTGCAGACCGCGATTCTACCCTCCGGAAGCTGTTCGTTCGCGGACTCGCCGGCGAAACCACCAGCGAGACCCTGCGCAGCGTGTTTTCTGTGTTCGGTGAACTCGACGAGGCCATCGTGATCTTCGACAAGGCCACGGGACGCTCGAAGGGCTACGGCTTCGTGGTTTTCCGCCACGTGGATGGCGCCATCCTCGCGCTTAAAGACCCGAGCAAGAAGATCGATGGCCGTATGACGGTCACGCAACTCGCAGCGGCCGGTGGGCCCGGCGGTTCCGGCGATGTATCGGCAAGGAAGGTCTTTGTTGGGAACGTGCCCTTCGAGATCTCCTCGGATAAACTCCTGTGCGAGTTCCTCAAGTTCGGAGAAGTCGAGGAAGGGCCTCTAGGGTTTGACAAATCGAGCGGTAAATCGAGGGGTTTCGCTTTCTTCGTTTATAAGACGGAGGAAGGTGCGAGGGCTTCTTTGGTGGAACCTGTTAAGACCATTGATGGGCACCAAGTGATTTGTAAATTGGCCGTCGATAGCAAGAAGACGAAACCTTTTGGAGGGGATCAACATCAGCATCAGCATCAACACACGCAGCAGCAGCAGCAGCAACAGATGCAACAACAAGGTCCTATGATGGTACCTCAGTATGGTGGATATGGTGGGAATGGCTATGGAATGCAGCACCCGGTGCCACCGTATAACAATCCGGTTCAAGTTTCTGGTAGTGGTGGGTATGGCCATGGAATCGGTGGTGGCTATGCTAATTCGCAGATGGGTGGGCCAGTTTCCGGAGACATTGGTGCTAGACTGCCTCCCAATTCTGGTGGTGGATTCCCTGAAGGCTCCCAGTATGGTTATCCTCCTTCTTCTACGCTTCCACTGCAGCAGCAATTGCCCATACCTAGGCCTCCTCCCGGAGGAATGTACCAAGGCGTCCCACCCTATTATTGA 1164 0.5662 MDFSKKRKTEENGDADSPSSQPSPPSPTATVTTTAPLAAEDIRKILRPFSQEQLLDLLQSASLRHPDVLDAVRAVADRDSTLRKLFVRGLAGETTSETLRSVFSVFGELDEAIVIFDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLAAAGGPGGSGDVSARKVFVGNVPFEISSDKLLCEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLVEPVKTIDGHQVICKLAVDSKKTKPFGGDQHQHQHQHTQQQQQQQMQQQGPMMVPQYGGYGGNGYGMQHPVPPYNNPVQVSGSGGYGHGIGGGYANSQMGGPVSGDIGARLPPNSGGGFPEGSQYGYPPSSTLPLQQQLPIPRPPPGGMYQGVPPYY 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02082 387 Gene3D - 4 168 IPR012677 -
Spst3g02082 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 160 IPR000504 GO:0003723
Spst3g02082 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 151 IPR000504 GO:0003723
Spst3g02082 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 240 IPR000504 GO:0003723
Spst3g02082 387 FunFam UBP1-associated protein 2C isoform A 167 306 - -
Spst3g02082 387 SUPERFAMILY RNA-binding domain, RBD 169 264 IPR035979 GO:0003676
Spst3g02082 387 MobiDBLite consensus disorder prediction 327 387 - -
Spst3g02082 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 253 IPR000504 GO:0003723
Spst3g02082 387 MobiDBLite consensus disorder prediction 368 387 - -
Spst3g02082 387 FunFam UBP1-associated protein 2C isoform A 66 166 - -
Spst3g02082 387 MobiDBLite consensus disorder prediction 1 33 - -
Spst3g02082 387 SUPERFAMILY RNA-binding domain, RBD 76 162 IPR035979 GO:0003676
Spst3g02082 387 Gene3D - 169 291 IPR012677 -
Spst3g02082 387 SMART rrm1_1 173 245 IPR000504 GO:0003723
Spst3g02082 387 SMART rrm1_1 84 156 IPR000504 GO:0003723
Spst3g02082 387 MobiDBLite consensus disorder prediction 253 280 - -
Spst3g02082 387 PANTHER GEO13361P1-RELATED 66 302 - -
Spst3g02082 387 MobiDBLite consensus disorder prediction 262 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02082 Spst-Chr3 57316995 57318158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02082 155 247 C2H2 Transcription Factor Family AT2G19380 31.183 1.12e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02082 K12741 - gmx:100804230 543.117