Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02056 ATGATTGATTTTACTAATTCAAGCAAAATGAGTTTCCCGTCCACCATTCCTCTGGCACTTCCAACAATTTGGCTCTCCTATTTACTCATTTCCATTGTTTCCATTAATTATTACCATGTTGAGGCTACGGATGGAGACAACAAAGTCATATCAATTGGTGCAATAATTGATGTTAACTCCCGCATTGGCAAAGAACAGCGTGTAGCCATGGACCTTGCAGCTCAAATTTACAATACCACTTCTAACACCTACAAGCTGGCTCTTCATTTTCGGCAACCCTCCAAAGATCCCTTCAGACCCACTTCCCTTGCTAGAAGGATGATTATAACGCAGAAGATGCAAGTGATTATAGGGATGCACACATGGACAGAAGCAGCTGCAGTGGCTGAATTAGGACGCAAAACTCAAGTTCCTGTCATATCCTTTGCAGGTCCTACCGTTACCCCACCATTGATGTCAATTCGTTGGCCTTCCTTGGTAAGAATGGCCAACGATGGGACTGCATATGCAAAATGTGTTGCAGATATGGTACATGCGTATAGTTGGCAGAGAGTAGTAGTCATTCATGAGGATGGAGATTATGAGATGCTAGCTCTGCTATCTGAGACCCTCCAAGATGTTGGCTCACTGATCGAGTACCGCTTAGCTCTTCCATCTCCTTCTTATCTTTCTAATCCTGGAGAGTTCATTCGCGAAGAGCTGTTCAAGGTGATTGAAAATACACAATCCCGAGTGTTCATTGTTCTGCAATCATCAATAGAAATGGTGATTCATTTGTTCAGAGAAGCTTCACAAATGGGACTAGTGGATGGAGAATCAGCTTGGATAATCCCAGAGAGCATAACTAATTTGCTTGATTCTGTCAACAAGTCTGCTATTTCCTACATGGAAGGAGCTTTAGGAATCAAGACCTACTACTCTGAACATAGCAGTGAATATCAAAATTTGGAGGCTCGGTTCAGGAAATCTTTTCGGGCCAAGTATGCTGAGGAGGATAACAGCAACCCGGGATTTTATGCTCTGCAAGCATTTGATAGCATTAAAATTGTTGCACAAGCAATAGATAGGATGGCCAGTAGCAGAAAAACTTTGCTAGGAGAAATACTTTCTAGCAATTTCGTTGGCTTCAGTGGAGAAATTCGATTTAAAGCAGCGAAGCTGGTGCAGAATTCTATCTTTAGGATCGTAAATGTACATAGGAAGGGTTACATAGAGTTAGACTTTTGGACTCCAGAAGATGGGTTCATGAGTAGCCTTCCTACAGAACAAGGTTCAAATAGTGTTTCTAGAAGTGGTGTTGTAATATGGCCAGGGAAGCTCAACAGAACTCCAAAGGGCTGGAATCTGCCTACTAAACAAAAAAAAATGAGAATAGCGATTCCTGGAAGAACCTCTTTTTCCAAGTTTGTCAAGGTTGACAAGCTTACAAATTCATATAAATACACTGGATTCTGCATTGAACTTTTTGAGAAGGTGTTACCCCTTTTGGGGTATGACCTGCCATATGACTTTTATCCCGTCAATGGAACCTATCCCGATCTGGTTCAACTTGTCCATAACAAGACGTATGAGGCTGTTGTTGGAGACGTGACCATATTAGAAGAGAGACTGGAATATGTAGATTTTACTATTCCATATGCAGAATCAGGGTTGTCAATGATAGTTACGGAAAAGTCCGAAGATTCGACATGGATGTTCATGAAGCCCTTCACCTGGCAGATGTGGGTAGCAACTGGTGCCGTGTTGATGTACACAATGATAGTTGTGTGGTGCCTGGAGCGGAAACCCAATCCTGAGTTTCATGGCAATTGGAAACGCCAGATCAGCACTGCACTTATGTTTACCTTCTCCTCTCTATTCTTCGCTCATAGGGAGAAACTTCATAGTGACTTAACTCGTGTGGTGATGGTATCATGGCTGTTTCTAGTTTTGATTCTTAACTCAAGCTACACTGCTAGTCTTTCTTCCATGCTCACAGTTCAACGACTGCGACCAAATGTGACTGACATTGAGTATCTGAAGAAGAACAACATGAAAATTGGTTGTGACGGGGACTCATTTGTTAGGACATACCTAGAGAAAATCCAACGATTCAAGCCAGAGAACATTGTCAAGATTAATAATGAATACAGTTACGAAGATGCTTTCAAAAACAACTCAATAGCAGCTGCTTTTCTCGAACTCCCCTATGAAAAAGTATATATCAGCAAATACTGCACGGGATACTCTGCCTTTGTACCTACCGCCAAATTCGGAGGACTGGGATTTGTGTTTCAGAAAGGCTCTCCAGTGGCCAAAGACTTTTCCAGAGCTATACTGCATCTCTTAGAGCAGGGAGAATTGGGGAAGTTAGAAGAGAAATGGTTGAACAATGGAGGTGAGTGCTCAAAAAAGTCGACCTCCGAGAGTACGGAAAGGTTGAGGCTTGAAAGTTTCTGGGTTCTGTACGTAATTTCTGGTGCCACTTCTACTATTTGTTTTTTAATTTACACCATCGAGTCGCGGAAATCTAGTCGAACATCCCAAGATGACGCCGAACAGGAAGACAACATCAGAGGTGAAAGCCGATGGAAAATGGTACTTGTAAAAGCTAAGAAGATGTACAGCAGAAAGCATGCACCACTTACAGACGAGCATCAGCAGGCAATGGCTCCACAATTACCAGACATCATAACTGTGTCTTCCCCACCCACCGTGCACAACTCTTGA 2709 0.4249 MIDFTNSSKMSFPSTIPLALPTIWLSYLLISIVSINYYHVEATDGDNKVISIGAIIDVNSRIGKEQRVAMDLAAQIYNTTSNTYKLALHFRQPSKDPFRPTSLARRMIITQKMQVIIGMHTWTEAAAVAELGRKTQVPVISFAGPTVTPPLMSIRWPSLVRMANDGTAYAKCVADMVHAYSWQRVVVIHEDGDYEMLALLSETLQDVGSLIEYRLALPSPSYLSNPGEFIREELFKVIENTQSRVFIVLQSSIEMVIHLFREASQMGLVDGESAWIIPESITNLLDSVNKSAISYMEGALGIKTYYSEHSSEYQNLEARFRKSFRAKYAEEDNSNPGFYALQAFDSIKIVAQAIDRMASSRKTLLGEILSSNFVGFSGEIRFKAAKLVQNSIFRIVNVHRKGYIELDFWTPEDGFMSSLPTEQGSNSVSRSGVVIWPGKLNRTPKGWNLPTKQKKMRIAIPGRTSFSKFVKVDKLTNSYKYTGFCIELFEKVLPLLGYDLPYDFYPVNGTYPDLVQLVHNKTYEAVVGDVTILEERLEYVDFTIPYAESGLSMIVTEKSEDSTWMFMKPFTWQMWVATGAVLMYTMIVVWCLERKPNPEFHGNWKRQISTALMFTFSSLFFAHREKLHSDLTRVVMVSWLFLVLILNSSYTASLSSMLTVQRLRPNVTDIEYLKKNNMKIGCDGDSFVRTYLEKIQRFKPENIVKINNEYSYEDAFKNNSIAAAFLELPYEKVYISKYCTGYSAFVPTAKFGGLGFVFQKGSPVAKDFSRAILHLLEQGELGKLEEKWLNNGGECSKKSTSESTERLRLESFWVLYVISGATSTICFLIYTIESRKSSRTSQDDAEQEDNIRGESRWKMVLVKAKKMYSRKHAPLTDEHQQAMAPQLPDIITVSSPPTVHNS 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02056 902 FunFam Glutamate receptor 451 563 - -
Spst3g02056 902 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 51 837 IPR015683 -
Spst3g02056 902 SMART GluR_14 455 791 IPR001320 GO:0015276|GO:0016020
Spst3g02056 902 Gene3D - 736 797 - -
Spst3g02056 902 Gene3D - 167 335 - -
Spst3g02056 902 FunFam Glutamate receptor 169 334 - -
Spst3g02056 902 PIRSF IGluLR_plant 20 363 IPR017103 -
Spst3g02056 902 PIRSF IGluLR_plant 356 889 IPR017103 -
Spst3g02056 902 Gene3D - 563 702 - -
Spst3g02056 902 Pfam Receptor family ligand binding region 68 400 IPR001828 -
Spst3g02056 902 CDD PBP1_GABAb_receptor_plant 51 419 IPR044440 -
Spst3g02056 902 Gene3D - 463 562 - -
Spst3g02056 902 Pfam Ligand-gated ion channel 791 820 IPR001320 GO:0015276|GO:0016020
Spst3g02056 902 Gene3D - 345 459 - -
Spst3g02056 902 FunFam Glutamate receptor 563 701 - -
Spst3g02056 902 CDD GluR_Plant 454 789 - -
Spst3g02056 902 SUPERFAMILY Periplasmic binding protein-like I 47 447 IPR028082 -
Spst3g02056 902 Pfam Bacterial extracellular solute-binding proteins, family 3 478 790 IPR001638 -
Spst3g02056 902 SUPERFAMILY Periplasmic binding protein-like II 433 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02056 Spst-Chr3 55222344 55225792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02056 40 857 Ion Channels AT2G29120 32.982 1.09e-141 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02056 - - gmx:100780320 1396.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02056 3 55222344 55225792 Spst3g02056 3 55222344 55225792 ECH