Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02050 ATGGCTATTCATGCAGGGATTCTTGAGGATGTGTGGGCTAAACTCATGAACAGTGATAGAGGGGTTGATTGTGATGCAACAGAGTCCTCTTCTCACTCCATGGAAGAACAGCCTAACCCTGAGGGAAGAGAAGGATCAATGGAAATTCTGAAAAGGCTTCCAAATTATGGAGACACCATTATGGACATTGGAAGTGCTGCTAAATCCAAAAAAAATGAGATAGAAGAAGATGGTGTGAGAGCAGAAAAAGCAGTGGTAAAACACTACAGGGGAGTAAGAAGAAGGCCATGGGGTAAATATGCAGCAGAGATTAGAGACTCATCAAAGAAAGGTGCTAGGGTTTGGCTTGGGACATTTGAAACAGCTGAAGAAGCAGCTAGGGCTTATGACAAAGCTGCTTTGAGAATTAGAGGTCCAAAGGCAAACCTTAATTTCCCACTTGACACAGCTTTTGTTGCACAGGCTTCAGGAATAGGCCAGAGAGGAACCGATTCGGACAAAGAAAACTCTTGCAATGCCCGGAAGAGAAAAGAAGAATTTGTGAATGGAAAACCTGTGACAAAAAAATTGGCAACAGTGGAAAATATTGTAAAAAACGATCTTGATGTTTTTGTGTTTCAAGACCTGGGGTGTGATTACTTGGACAATTTGCTATCTACCTTTTAA 666 0.4174 MAIHAGILEDVWAKLMNSDRGVDCDATESSSHSMEEQPNPEGREGSMEILKRLPNYGDTIMDIGSAAKSKKNEIEEDGVRAEKAVVKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFETAEEAARAYDKAALRIRGPKANLNFPLDTAFVAQASGIGQRGTDSDKENSCNARKRKEEFVNGKPVTKKLATVENIVKNDLDVFVFQDLGCDYLDNLLSTF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02050 221 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Spst3g02050 221 MobiDBLite consensus disorder prediction 22 46 - -
Spst3g02050 221 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Spst3g02050 221 SUPERFAMILY DNA-binding domain 88 147 IPR016177 GO:0003677
Spst3g02050 221 CDD AP2 87 146 IPR001471 GO:0003700|GO:0006355
Spst3g02050 221 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Spst3g02050 221 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Spst3g02050 221 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Spst3g02050 221 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Spst3g02050 221 PANTHER DNA-BINDING DOMAIN 41 185 IPR044808 GO:0003700|GO:0009873
Spst3g02050 221 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02050 Spst-Chr3 55142550 55143301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02050 87 194 AP2-EREBP Transcription Factor Family AT5G51190 50.877 9.16e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g02050 AP2 9.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02050 - - gmx:100820226 219.935