Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02048 ATGTCTTCTTCCAATAAACACTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATTCCCAAAACCAATGGCAGCATGACAACAACTCTTCTGTCTTGTCCACTGGATGCCAAAGAAGCCCTTATACTTCAGGAAGTGAAGAGAGAACTCCAGAACCAAAGCCAAGATGGAACCCAAAACCCGAACAGATTCGCATTCTAGAAGCCATCTTCAATTCTGGGATGGTGAATCCCCCAAGGGATGAGATAAGGAAGATCCGGGTGCAGTTGCAGGAGTATGGCCAAGTTGGTGATGCCAATGTCTTCTACTGGTTCCAGAATCGTAAATCCAGGAGCAAGCACAAACTCCGCCATATCCAAAACTCAAAGAACCAAAACACAGAAACACAACCAAACTCAGTTTCTCTCTCTCAAATCACACCACCTTCATCCTCATCCTCGTCCTCTGACAAATCCTCTTCAAAAGAATTAGTGCACCCCAATGGGTTCTCCTTTGGTTTCTCAAATGTCAATGATGCAGTGCCTAATTCTCCCACTCCTTCTGTGAATCAGACCTACTTTCAGTCTCACACCCACAATAACACCAATTTGCTACCACCAATAGAGTCTCTCTCCTTTCCTTTGCACAATAATGGTCAAGGTGTGATAGTTAATAATACCATCACAACGCATGGGTTTTCTGTTCCTCAATTCTCCAACAATAGCATGCAATCTCAACCTCAGTGTCAACCAAATGTTGGACCTTGCACTAGTCTTTTCCTCAACGAGATCATGAACCATGGAACCTTCTCAAAGAAAGACCAAGATCAGGACAGGGCATTGAAGTTAATGCACCCTCAACAACTTAGCTTCCCTCTGACTTCCTCTCCAACCACAGCCATTGTTCCTCCAATCTCAAATCTTCAATGTCCAATCACCCAACTTCAAGGTGTTGGTGGTGAGGTTGCAGCAGATAGAGCAAAATGTATAGTTTTCATTAACGACGTTGCATTTGAGGTTATGATGGGACCCTTCAACGTGCGCCAAGCCTTTGGAGATGAAGCTGTGCTTATCCACTCTTCAGGCCCTGTCCCCACCGACGAGTGGGGCACTACCCTCCACCCACTACAGCACGGTGCTTGCTATTATCTGGTGCGCATATAG 1140 0.4553 MSSSNKHWPSMFKSKPCNSQNQWQHDNNSSVLSTGCQRSPYTSGSEERTPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQNSKNQNTETQPNSVSLSQITPPSSSSSSSDKSSSKELVHPNGFSFGFSNVNDAVPNSPTPSVNQTYFQSHTHNNTNLLPPIESLSFPLHNNGQGVIVNNTITTHGFSVPQFSNNSMQSQPQCQPNVGPCTSLFLNEIMNHGTFSKKDQDQDRALKLMHPQQLSFPLTSSPTTAIVPPISNLQCPITQLQGVGGEVAADRAKCIVFINDVAFEVMMGPFNVRQAFGDEAVLIHSSGPVPTDEWGTTLHPLQHGACYYLVRI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02048 379 MobiDBLite consensus disorder prediction 174 193 - -
Spst3g02048 379 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Spst3g02048 379 FunFam WUSCHEL-related homeobox 11 53 120 - -
Spst3g02048 379 MobiDBLite consensus disorder prediction 1 46 - -
Spst3g02048 379 Gene3D - 53 119 - -
Spst3g02048 379 CDD homeodomain 52 114 IPR001356 GO:0003677
Spst3g02048 379 Pfam Homeodomain 53 113 IPR001356 GO:0003677
Spst3g02048 379 MobiDBLite consensus disorder prediction 121 155 - -
Spst3g02048 379 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 378 IPR044557 GO:0003700|GO:0050793
Spst3g02048 379 SMART HOX_1 51 118 IPR001356 GO:0003677
Spst3g02048 379 MobiDBLite consensus disorder prediction 1 60 - -
Spst3g02048 379 MobiDBLite consensus disorder prediction 113 155 - -
Spst3g02048 379 SUPERFAMILY Homeodomain-like 46 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02048 Spst-Chr3 55126601 55128382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02048 1 377 Wox Gene Family AT2G33880 44.208 1.17e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Spst3g02048 Homeodomain 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02048 - - gmx:100778000 565.844