Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02030 ATGCCTGCCCTCATCGATCTCAACAGCGCCACAGAGGACCATGAAGCGCCGTCGTCTCACCCCTCCTCCGTCTGCCTCGAACTCTGGCACGCTTGTGCGGGTCCTATGATCTCCTTGCCCAAGAAAGGGACCCTTGTCGTGTACTTCCCACAAGGACACTTGGAACAACACCTTCACGATTTTCCGCTCCCTGCTTCTGCTAACATCCCCTCCCATCTCTTCTGTCGCGTTCTCGATGTCAAGCTCCATGCTGAGGAAGGGAGCGATGAAGTATATTGTCAGGTGGTGTTGGTTCCCGAAAGTGAGCAAGTGCATCATAAGTTGCGGGAAGGAGAAATTGATGCTGATGGTGAAGAGGATGCTGAAGCTGTGATGAAGTCTACAACACCCCACATGTTCTGCAAGACTTTGACCGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTGCCTCGTCGTGCTGCGGAAGATTGCTTTCCACCCCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTTGTGGCGAAGGATCTGCATGGCCAAGAATGGAGGTTTCGACATATTTACAGGGGGCAACCACGACGACACTTGCTTACCACTGGGTGGAGTGCATTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTATTGTTTCTTAGGGGTGAGGATGGAGAACTAAGATTGGGAATTCGTAGGGCCGCTCAATTGAAAAGTGGCAGTACCATTTCAACTCTTGCTGGCCAGCAATTGAATCTTAGCAGTCTGATGGATGTGGTTAATGCTTTATCAGCAAGATGTGCCTTTAGCATTCACTATAATCCAAGGGTCAGCTCATCTGAGTTCATCATACCTATCAAGAAATTCTTGAAGAGCCTTGATTATTCTTATTCAGTTGGAACAAGATTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGATTTACAGGATTGATTGTTGGAATTGCTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTAATGGTTAGGTGGGATGACTTGGAAGCCACTAGGCATAATAGGGTTTCACCATGGGAGATTGAACCATCTGGTTCTGCATCTACTTCAAATACCTTGATATCAGCTGGTTTGAAGAGGACCAAGATTGGATTGCCTTCAACCAAGCTAGAATTTCCAGTTTCCAATGCAATTGGAGCATCAGACTTTGGGGAATCTCTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTGGGTGTTAATACTTCTTTTGATAGTATTAGTGGTCAGAGTCACCAGCTATCTGATTTGAGGAGATGCTATTCTGGCTCGAACTGTCCTAGGATTGCTGCAACAGGAAATAACATTGGAATTCCGCAAGTGAGTTCCAATGTTTCCTGCAATGGCATAGGCTTTAGTGAATCTTTCAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGGGCCCTGTCTGTAGATGAGGCTTGTGGAAATGATCGCTTTGGACCTTTTGATGGTTACCATGCACTGAGATCCAGAAATGGATGGTCTTCCCACATGAGTAACAATTCTTCACATTTGCATCCTCCTGTTCCATCAGGGCAAGTTTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTCAATCCAGTTTCAAACTCTGATTATAACAAAATTAGTCAGGTGATGGAAGGTAAACTCCATCAGCAACGTTCACACACTTCCGAATTTAAAGGCGGGAAATTTGTATCAACCCCATATGAGCCTCTTCGTGGACTAGCTCAAGAAGGCACACATTCTTTCGGTGTCTCAAACTTGCATAATCAGTTAGAAAGTTCACGTTCACATGATTCCATTTCAGCACTTAGGGCCAGTCAAGAGTTGGTTCCCTCATGTAAAAGTGGATGCAGAGTCTTTGGCTTTTCATTAACTGAGGGTGCTCCCGTTTCTAATAAAGAAGTAGCTGCTGCTAACCCATCTCCAGTCACATGCTCTGGACCTTCCTTTGCAAGACATGTCGAAGATGATTTCCATCCAGGGCTTACACTTAGGAGCAAGACAGTGGGAAGTTATTGCACCAAAGGTGTGCTGCAATATTGA 2124 0.4562 MPALIDLNSATEDHEAPSSHPSSVCLELWHACAGPMISLPKKGTLVVYFPQGHLEQHLHDFPLPASANIPSHLFCRVLDVKLHAEEGSDEVYCQVVLVPESEQVHHKLREGEIDADGEEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSTISTLAGQQLNLSSLMDVVNALSARCAFSIHYNPRVSSSEFIIPIKKFLKSLDYSYSVGTRFRMRFETEDAAERRFTGLIVGIADVDPVRWPGSKWRCLMVRWDDLEATRHNRVSPWEIEPSGSASTSNTLISAGLKRTKIGLPSTKLEFPVSNAIGASDFGESLRFQKVLQGQEMLGVNTSFDSISGQSHQLSDLRRCYSGSNCPRIAATGNNIGIPQVSSNVSCNGIGFSESFRFQKVLQGQEILPSQPYGRALSVDEACGNDRFGPFDGYHALRSRNGWSSHMSNNSSHLHPPVPSGQVSSPSSVLMFQQAVNPVSNSDYNKISQVMEGKLHQQRSHTSEFKGGKFVSTPYEPLRGLAQEGTHSFGVSNLHNQLESSRSHDSISALRASQELVPSCKSGCRVFGFSLTEGAPVSNKEVAAANPSPVTCSGPSFARHVEDDFHPGLTLRSKTVGSYCTKGVLQY 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02030 707 CDD B3_DNA 131 233 IPR003340 GO:0003677
Spst3g02030 707 SUPERFAMILY DNA-binding pseudobarrel domain 126 242 IPR015300 -
Spst3g02030 707 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Spst3g02030 707 Gene3D - 131 235 IPR015300 -
Spst3g02030 707 SMART B3_2 133 235 IPR003340 GO:0003677
Spst3g02030 707 Gene3D - 296 370 - -
Spst3g02030 707 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 653 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst3g02030 707 FunFam Auxin response factor 131 235 - -
Spst3g02030 707 FunFam Auxin response factor 296 367 - -
Spst3g02030 707 Pfam Auxin response factor 260 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst3g02030 707 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02030 Spst-Chr3 53913976 53919574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02030 132 534 B3 DNA Binding Superfamily AT2G33860 54.926 3.20e-144 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst3g02030 B3 8.8e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02030 K14486 - gmx:100808119 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02030 3 53913976 53919574 Spst3g02030 3 53913976 53919574 ECH