Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01996 ATGCGGTGTCATGGCTTAACCGTACACGGAACCAACCACCGTGGCTTCTGCGTCCCCACCGTGTCTCCGCTGTTTTCCAGACCCACCCGACCCGTCACCCGAATTTCGTTTCCCAAGGCCACCCTCAAGAACGACGGACTAGTCATGGAGTTGAGCTTCTACGAGCTTCTGGGCATACCCGAGTCCGGTTCCTTGATGGAGATCAAGAACGCGTACAAGCAACTCGCCCGGAAGTACCACCCGGACGTGTCGCCGCCGGGTCGGGTCGAGGAGTACACCAAACGGTTTATTCAGGTGCAGGAGGCCTACGAAACCCTCTCCGATCCTTCCCGAAGAGCCATGTACGATCACGACATGGCCAAGGGCATTAACTTTGCTTTCAACGCCCGCAGACGCCACAATTACCACGATCAGGTGGTTGAACAAAAAAGTGAATGGAAATCAAGGTGGCAATCTCAGTTGTCAGAGCTGAAGAGAAGAAGTAACAACAAAGATGGTGGAGGGAATATGTCATGGGCAGCTCGAATGCGTCAGCAGAGGGATGAATTGTCAAATGAATCATGA 564 0.5337 MRCHGLTVHGTNHRGFCVPTVSPLFSRPTRPVTRISFPKATLKNDGLVMELSFYELLGIPESGSLMEIKNAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPSRRAMYDHDMAKGINFAFNARRRHNYHDQVVEQKSEWKSRWQSQLSELKRRSNNKDGGGNMSWAARMRQQRDELSNES 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01996 187 Gene3D DnaJ domain 40 158 IPR036869 -
Spst3g01996 187 ProSiteProfiles dnaJ domain profile. 52 119 IPR001623 -
Spst3g01996 187 SUPERFAMILY Chaperone J-domain 51 125 IPR036869 -
Spst3g01996 187 CDD DnaJ 53 108 IPR001623 -
Spst3g01996 187 FunFam Chaperone protein dnaJ 20, chloroplastic 40 148 - -
Spst3g01996 187 Coils Coil 173 187 - -
Spst3g01996 187 ProSitePatterns Nt-dnaJ domain signature. 96 115 IPR018253 -
Spst3g01996 187 PRINTS DnaJ domain signature 54 72 IPR001623 -
Spst3g01996 187 PRINTS DnaJ domain signature 72 87 IPR001623 -
Spst3g01996 187 PRINTS DnaJ domain signature 91 111 IPR001623 -
Spst3g01996 187 MobiDBLite consensus disorder prediction 151 187 - -
Spst3g01996 187 SMART dnaj_3 51 111 IPR001623 -
Spst3g01996 187 Pfam DnaJ domain 53 116 IPR001623 -
Spst3g01996 187 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 49 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01996 Spst-Chr3 51274857 51277303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01996 54 116 C2H2 Transcription Factor Family AT1G74250 45.455 6.88e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01996 - - gmx:100101903 333.183