Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01980 ATGGACGGTGCGCCATCATCCGCCGCTGCCGCCGCCGCCGCTTCCGCCGCCGCCGCCGGAGCTGGAGGACCAGCGCCGTTTCTTCTGAAGACGTACGACATGGTGGACGATTCCTCCACCAACGACATCGTTTCGTGGAACTCTTCTAACACCAGCTTCGTCGTGTGGAACCCGCCGGAGTTCGCTCGCCTTCTTCTCCCGACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAATACCTACGGATTTAGAAAAATACATCCAGAGCGATGGGAATTTGCTAATGATGAGTTTGTGAAAGATCAGAAGCATCTTCTTAAGAATATACATCGTAGGAAACCTATCCACAGTCATAGTCATCCTCCTGGTACTCTTGTAGACCCAGAAAGAGCAGCATTTGAGGAAGAAATCGAGAAACTTTCCCGTGAGAAAACTTCTCTTGAATCCAATATTCATAACTTCAGACAACATCAGTCAACAACAAAGCTTCAACTGGAAGATTTTTTGCAACGGTTAGACGGTACGGAGAAAAGGCAGAAACAATTGCTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTAGTTTTGTTGAACATCTTTCACGAAAAATTGAGTCCATGGATTTATCAGCATATAATAAGAAGAGGCGATTGCCTCAAGTTGACCACGTTCAACCAGTTGCGGAAAGTAGCTTGGTGGACAATCATAACAATTTTAGAATGGAATTTGGAATTGTGTTTCATCAGGATTTCTCAAATAAGCTCAGACTGGAATTATCACCAGCTGTCTCAGATATGAACTTGGTATCACGTAGCACACAGAGTTCAAATGAAGATGGGGAAAACCCACAGAGAAAACTGTCTGAAGTAGAACCAAAAGTAGTGCAGACAAGAACATCTCTTACTTTTGCACCTGAAACATTAGAACTTGCAGATACAGGGGCTTCTTTTACTTTTAGGATGGATCCATGTTTACCGCGAAAAGCAACAACTACTGAGAACTCAAAACTGATCTCTTTGGAGCCAAGTAGTGAAGAAGGCGATAGTCATATATCCTGCCAATTAAATTTAACCCTGGCATCTTGTCCATTGCAAGTGAACAGAAATTCTTACTCAGCCAGATCACCCCAAATTGACTGTCAAGAAATTGGCAAATTGGCAGAATCGAGATTTTTTGCCAATGGTAAAGAATCTGATAGTGGCGTTTCCTCAAACCGAAACGTAGCTGAGGCTACCGATTTAGCTTCACCAAAGGAGGCTAGTAACAACCAAGTTAATCCAGCTCCTCCAGACAGGGTGAACGATGTTTTCTGGGAACAGTTTCTTACCGAAAGGCCAGGCTGTTCTGACAATGAAGAGGCAATATCCAATTACCGAGCTAACCCATATGATGAACAAGATGAAGGACGGTCAGTTCATGGAATATCTAGAAACATTAAGAACATGGATCAACTCACACTTTGA 1473 0.4372 MDGAPSSAAAAAAASAAAAGAGGPAPFLLKTYDMVDDSSTNDIVSWNSSNTSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDEFVKDQKHLLKNIHRRKPIHSHSHPPGTLVDPERAAFEEEIEKLSREKTSLESNIHNFRQHQSTTKLQLEDFLQRLDGTEKRQKQLLNFFEKALQNPSFVEHLSRKIESMDLSAYNKKRRLPQVDHVQPVAESSLVDNHNNFRMEFGIVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGENPQRKLSEVEPKVVQTRTSLTFAPETLELADTGASFTFRMDPCLPRKATTTENSKLISLEPSSEEGDSHISCQLNLTLASCPLQVNRNSYSARSPQIDCQEIGKLAESRFFANGKESDSGVSSNRNVAEATDLASPKEASNNQVNPAPPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQDEGRSVHGISRNIKNMDQLTL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01980 490 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g01980 490 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 275 IPR027725 -
Spst3g01980 490 MobiDBLite consensus disorder prediction 398 435 - -
Spst3g01980 490 Gene3D - 22 117 IPR036388 -
Spst3g01980 490 MobiDBLite consensus disorder prediction 271 296 - -
Spst3g01980 490 ProSitePatterns HSF-type DNA-binding domain signature. 66 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g01980 490 MobiDBLite consensus disorder prediction 399 432 - -
Spst3g01980 490 SUPERFAMILY "Winged helix" DNA-binding domain 23 116 IPR036390 -
Spst3g01980 490 MobiDBLite consensus disorder prediction 466 490 - -
Spst3g01980 490 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g01980 490 Coils Coil 134 161 - -
Spst3g01980 490 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g01980 490 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g01980 490 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g01980 490 FunFam Heat shock transcription factor 1 20 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01980 Spst-Chr3 49937524 49946447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01980 1 490 HSF AT4G13980 53.320 1.46e-170 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst3g01980 HSF_DNA-bind 4.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01980 K09419 - gmx:100816484 858.211