Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01974 ATGGATGAAGAAAAGCGTGTGGCGGTTCTACCATGGCTGCGCCATCCCGTCGACCTCACTCGCGGTGAACAACTCTGCGTTCGTATGGTTCCTTTCATGGACCGCAGGTTAAAGTCGGTTCTAGAGAACATGGAGATCTCGAACCTCTTCCCAGTTCAAGTGGCGCTTTGGCATGAAACTGTGGGACCAGGTAACTTTGAACGAGATCTTTGCATAAACTCGCCCACAGGAAGTGGCAAAACCTTGGCCTATGCTCTTCCAATCGTGCAAAAGTTGTTACCTTCTTCCACAATCAAGTGCCTTCGTGCTTTGGTTGTGGTTCCCACCCGTGACCTTGCCTTGCAGGTTAAACAGGTTTTCGACGCCCTTACATTGCCATTGGGCCTGCGTGTTGGCTTGGCTGTTGGTCAATCTTCGGTTGTTGATGAGATTTCTAGTCTCGTACACGTACCGGGGGAAGAGGAGGGTCCAAATCCTGGGTTTTTCTCTCCGTTCTGGTTTCAAAGCAAGGTGGACATATTGGTGGCAACCCCCGGAAGGCTTGTGGACCATGTGAACATGTCTAGGGGTTTCACATTGAAGCATCTTCGTTATCTAGTAGTTGATGAAGCAGATCGGTTGCTCCGGGAGGACTACCAGTCCTGGTTACCGACTGTACTTAAATCGACACAATCTAACAACGATGATGTTACTGGGGATGATGATGTTTTCCAATTGGGTGGAGTTGAGAGGGGGTCCAATCCCCACCATAGGCTGGCAAAGGTGGTTTTATCTGCGACATTAACTCGGGATCCAGGAAGGCTTGTTCTGCTTAATTTGCATCACCCTTTATTCCTAAGTGCTGGACAAATGCGTTATCGTCTCCCAGAAAACTTGGAAGCATACAAACTGATCTGTGAAAGAAAGGTCAAACCCTTGTACTTGGTTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCGTAGTTTTTACAAAATCTGTGGAATCTACCCATCGTCTCTGCAAATTACTTAATTGTTTTGAAGATCTGCAAATTGATATCAAGGAGTATTCTGGTCTTCAACATCAACGGGTAAGAAGCAAGACACTAAATGAATTTCGAAAAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACATAAAGACCTATGTTCATCGAGCTGGCAGGACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACGTTGATGTCTAATGATGAGGTTGGACGATTTAAGAAGTTGATGAAAAAGGCCGAGGCTAGTGCATGTCTTGAGCATACTATTCCATCCTGTTTGATAGAAGCACTTCATAGTACCTACCAATCAGCGCTGTCAAAACTGAAGGAGATAATTTTGGAGACCCGGAAGAAACCCAAGGATAAGTCTTGTCAATAG 1458 0.4588 MDEEKRVAVLPWLRHPVDLTRGEQLCVRMVPFMDRRLKSVLENMEISNLFPVQVALWHETVGPGNFERDLCINSPTGSGKTLAYALPIVQKLLPSSTIKCLRALVVVPTRDLALQVKQVFDALTLPLGLRVGLAVGQSSVVDEISSLVHVPGEEEGPNPGFFSPFWFQSKVDILVATPGRLVDHVNMSRGFTLKHLRYLVVDEADRLLREDYQSWLPTVLKSTQSNNDDVTGDDDVFQLGGVERGSNPHHRLAKVVLSATLTRDPGRLVLLNLHHPLFLSAGQMRYRLPENLEAYKLICERKVKPLYLVALLKSLGEEKCVVFTKSVESTHRLCKLLNCFEDLQIDIKEYSGLQHQRVRSKTLNEFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSNDEVGRFKKLMKKAEASACLEHTIPSCLIEALHSTYQSALSKLKEIILETRKKPKDKSCQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01974 485 Pfam DEAD/DEAH box helicase 55 265 IPR011545 GO:0003676|GO:0005524
Spst3g01974 485 Pfam Helicase conserved C-terminal domain 304 415 IPR001650 -
Spst3g01974 485 CDD DEADc_DDX51 37 280 - -
Spst3g01974 485 Gene3D - 291 485 IPR027417 -
Spst3g01974 485 SMART helicmild6 331 415 IPR001650 -
Spst3g01974 485 Gene3D - 24 282 IPR027417 -
Spst3g01974 485 PANTHER RNA HELICASE 39 439 - -
Spst3g01974 485 CDD SF2_C_DEAD 295 423 - -
Spst3g01974 485 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 200 208 IPR000629 -
Spst3g01974 485 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 61 279 IPR014001 -
Spst3g01974 485 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 307 457 IPR001650 -
Spst3g01974 485 SMART ultradead3 45 295 IPR014001 -
Spst3g01974 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 436 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01974 Spst-Chr3 49378351 49382946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01974 69 428 Eukaryotic Initiation Factors Gene Family AT3G13920 25.833 7.52e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01974 K14807 - gmx:100789424 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01974 3 49378351 49382946 Spst3g01974 3 49378351 49382946 ECH