Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01961 ATGCCACAAATAATGAGATTTTCAACACTTGAAGTTGTGTTGCTCTTGTGTTTTTCTCCTATGCTAGTCCTTGGTCTGGGCAACTCAGATAGTGACACTAATTTGAGAGTGCTGTTGGAAGTAAAGAAGTCTTTTGTGAAAGACCCACAAAATGTTCTGGGTGATTGGTCAGAGGATAACATTGACTACTGCAGTTGGAGAGGGGTGTCATGTGAATTGAACTCAAACTCAATTTCAAACACTTTAGATGGTGACTCTATGCAAGTGGTGGGTCTCAATCTTTCTGACTCGGCACTCACCGGCTCAATATCACCTTCACTCGGTCGCTTGCAAAACCTGCTCCACCTAGATCTCTCGACCAACAGCCTCACAGGTCCCATTCCACCTAATCTCTCCAACCTCACTTCCATAGAATCTTTGCTTCTCTTCTCCAACCAACTCACGGGTCCCATACCGACTGAGTTCGGCTCTCTCACGAGTCTCCGAGTCATGCGACTCGGTGACAATGCACTATCGGGAACGATTCCCGCGTCTCTCGGCAACCTGGTCAACTTGGTCAACCTTGGCTTGGCTTCCTGTGGACTCACCGGGTCGATTCCAAGTCAACTCGGTCAACTCAATCTCATGGAGAAAATGATTCTGCAAGACAACGAGTTGATGGGTCCGATTCCCACCGAGTTGGGGAACTGCTCAAGCCTCGCCATATTCACTGCAGCTAACAACAAATTCAATGGCTCAATGCCAAGGGAACTGGGTCGACTCAGCAATCTGCAAATTCTCAACTTTGCCAACAATAGTATATCGGGAGAGATTCCGAGTCAACTCGGTAATATGAGCCAACTCGTTTACCTGAACTTAATGGGGAACCAACTCGAGGGTGCCATTCCACCGTCTCTAGCTCAACTTGGTAATCTTCAAAATCTGGACTTATCAATGAACAAGCTCAGTGGAGGAATCCCAGAGGAGTTAGGCAACTTGGGGGAGCTAGTTTATTTGGTTCTGTCGGGTAACAACTTTAATCGTGCCGTACCAAAGACGATATGTTCCAACGCAACAAGTTTGGAACACTTGATGTTGTCAGAAAGTGGACTTCATGGTGAGATTCCAGCTGAGTTGAGTCAATGCCAGCAACTGATGCAACTTGATTTATCCAACAATGCACTCAATGGGTCCATACCTCTTCAGCTTTATGGGCTGCTGCGTTTAACTGATCTCTTGCTAAACAACAACAGCTTGGTTGGTTCCATCTCTCCCTTCATAGGGAACCTCAGTGTCTTGCAGACACTTTCTTTGTTTCACAACAATTTGGAAGGTGTTCTGCCTAGAGAGATTGGAATGCTTGGCAAGTTGGAAATTTTGTACCTTTATGATAACCAATTGTCAGGAGCTATACCGGTGGAGATTGGTAGTTGTTCTAGCTTGCAAATGATTGATTTCTTTGGAAACCGTTTCAGTGGGGAAATTCCTGTCACTATTGGATGGCTGAAAGAGTTGAATTTCCTTCACCTTAGACAGAATGAGCTCGTGGGTGAGATTCCAGCCACCCTGGGTAATTGTCATAAACTGAACATCCTGGATTTGGCTGACAATCAACTCTCAGGTGCAATTCCTGCAACGTTTGGATTCCTCACGGAATTGCAGCAACTTATGCTCTACAACAATTCCCTTGAAGGTAATCTCCCTCACCAACTGATAAATTTAGCAAAATTGACCAGAGTGAATCTTTCTAAGAACAGATTGAATGGTAGTATAGCTGCATTGTCTGGCTCTCAATCATTTCTTTCTTTCGATGTTACCGACAACGTGTTTGACGGTGAAATTCCTTCCCAGATGGGAAACTCACCATCCCTTGAGAGGCTAAGATTAGGTAACAATAAATTTTCTGGAGAAATTCCAAGGACATTGGGAAAAATCCATGAGCTGTCTTTGTTAGACCTCTCAGGAAATTCACTCACTGGACCAATCCCAGCTGAGCTTTCTTTGTGCAACAAACTGGCTTATATTGATTTAAACAATAATTCTATTTTCGGACAAATACCATCATGGCTAGGAAGCTTGTCTCAGTTGGGAGAGCTAAAGCTCTCCTCCAATAATTTTTCTGGGCCTCTTCCATTAGGCCTATTCAAATGTTCCAAGTTGCTAGTTCTCTCTCTAAATGACAACTCCCTGAATGGAAGTCTCCCATCTGATATTGGTGATCTTGCATACCTCAATGTCCTCAGACTTGACCACAACAAGTTTTCTGGACCAATCCCTCGGGAGATAGGTAAGTTGATCAAGCTTTATGAGCTCCGGCTCTCCAGAAATAGATTCAATGGTGAGATGCCTCTTGAGATTGGAAAACTTCAAAATCTCCAAATCATTTTAGACCTTAGTTACAATAATCTCTCGGGTCTCATTCCACCTTCTATTGGGACACAGTCAAAGTTAGAAGCACTTGATCTTTCCCACAATCAACTCACTGGAGAAGTCCCTCCACAAATTGGAGAAATGAGCAGCTTGGGAAAGCTTGATGTCTCTTATAACAACCTTGAAGGAAAATTAGATAAGCAGTTTTCCCGCTGGCCAGACCAGGCATTTGAAGGAAACCAACATCTTTGTGGAAGCCCTCTTGAGAGCTGCCACCGAGATGACGATTCTAGGAATGCAGGCCTGAATGAGTCATCAGTAGTGATAATCTCTTCCGTTTCAACTTTAGCTGCAATTACACTTCTGATAATTGCAGTGAGAATCTTCTGCAAAAACAAGCAAGAATTTAGCAGGAAAGCCAGTGAAGTGAATTATGTTTACTCTTTTTCTTCATCACAAGCACAGAGAACTCCGCTGTTCCAACTAAAGGCAGCTGGAAATAGAAATTACAGATGGGAAGACATCATGGATGCAACGAACAATCTAAGTGATGACTTCATGATTGGCTCAGGAGGGTCAGGGAAAATCTACAAAGCTGAATTGGCCTCTGGAGAGACGGTGGCTGTCAAGAAGATTTCATCAAAGGATGAATTTCTGTTAAACAAAAGCTTCATAAGAGAAGTTAAGACACTAGGGAGGATTAGGCACAAACATCTGGTGAAGCTAATAGGATATTGTAGCAATAGAAACAAAGAAGCAGGTTCGAATCTGTTAATATATGAGTACATGGAGAATGGGAGTATATGGGATTGGCTTCACGGGAAACCAGCCAAGGTAAGCAAAGTAAAGAGAGGCCTTGATTGGGAGACAAGGTTCAAAATTGCTGTAGGATTAGCCCAAGGAGTGGAATATCTGCATCACGATTGCGTCCCAAAGATTATTCACAGGGACATCAAATCCAGCAACGTATTGCTAGACTCCAAAATGGAGGCACACTTGGGGGATTTTGGACTGGCTAAAGCACTAACTGAGAATTATGACTCCAATACTGAGTCTAATTCTTGGTTTGCTGGCTCTTATGGCTACATGGCTCCAGAATATGCATACTCCCTACAAGCAACAGAAAAAAGTGACGTCTACAGCATGGGAATAGTGCTCATGGAACTTGTTAGTGGTAAAACGCCAACAAATGAAATTTTTGGCGATGAGATGAACATGGTGAGATGGGTAAAGATGCACATGGATAAGCATGGTTCTACCCAGGAGAAATTGATAGATCCTGAATTGAAACCTCTTTTACCTGGCGAAGAGTTTGCTGCATTACAAGTGCTTGAGATAGCTGTACAGTGCACAAAAACTACACCACAGGAGAGGCCATCTTCAAGGAAAGCATGCGATCTTCTCCTCCATGTATTCAGCAACAAGATGGTGAACTTTGACAAGATGAACTTGGAGCATTACAAATGA 3816 0.4337 MPQIMRFSTLEVVLLLCFSPMLVLGLGNSDSDTNLRVLLEVKKSFVKDPQNVLGDWSEDNIDYCSWRGVSCELNSNSISNTLDGDSMQVVGLNLSDSALTGSISPSLGRLQNLLHLDLSTNSLTGPIPPNLSNLTSIESLLLFSNQLTGPIPTEFGSLTSLRVMRLGDNALSGTIPASLGNLVNLVNLGLASCGLTGSIPSQLGQLNLMEKMILQDNELMGPIPTELGNCSSLAIFTAANNKFNGSMPRELGRLSNLQILNFANNSISGEIPSQLGNMSQLVYLNLMGNQLEGAIPPSLAQLGNLQNLDLSMNKLSGGIPEELGNLGELVYLVLSGNNFNRAVPKTICSNATSLEHLMLSESGLHGEIPAELSQCQQLMQLDLSNNALNGSIPLQLYGLLRLTDLLLNNNSLVGSISPFIGNLSVLQTLSLFHNNLEGVLPREIGMLGKLEILYLYDNQLSGAIPVEIGSCSSLQMIDFFGNRFSGEIPVTIGWLKELNFLHLRQNELVGEIPATLGNCHKLNILDLADNQLSGAIPATFGFLTELQQLMLYNNSLEGNLPHQLINLAKLTRVNLSKNRLNGSIAALSGSQSFLSFDVTDNVFDGEIPSQMGNSPSLERLRLGNNKFSGEIPRTLGKIHELSLLDLSGNSLTGPIPAELSLCNKLAYIDLNNNSIFGQIPSWLGSLSQLGELKLSSNNFSGPLPLGLFKCSKLLVLSLNDNSLNGSLPSDIGDLAYLNVLRLDHNKFSGPIPREIGKLIKLYELRLSRNRFNGEMPLEIGKLQNLQIILDLSYNNLSGLIPPSIGTQSKLEALDLSHNQLTGEVPPQIGEMSSLGKLDVSYNNLEGKLDKQFSRWPDQAFEGNQHLCGSPLESCHRDDDSRNAGLNESSVVIISSVSTLAAITLLIIAVRIFCKNKQEFSRKASEVNYVYSFSSSQAQRTPLFQLKAAGNRNYRWEDIMDATNNLSDDFMIGSGGSGKIYKAELASGETVAVKKISSKDEFLLNKSFIREVKTLGRIRHKHLVKLIGYCSNRNKEAGSNLLIYEYMENGSIWDWLHGKPAKVSKVKRGLDWETRFKIAVGLAQGVEYLHHDCVPKIIHRDIKSSNVLLDSKMEAHLGDFGLAKALTENYDSNTESNSWFAGSYGYMAPEYAYSLQATEKSDVYSMGIVLMELVSGKTPTNEIFGDEMNMVRWVKMHMDKHGSTQEKLIDPELKPLLPGEEFAALQVLEIAVQCTKTTPQERPSSRKACDLLLHVFSNKMVNFDKMNLEHYK 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01961 1271 Gene3D Ribonuclease Inhibitor 31 190 IPR032675 -
Spst3g01961 1271 Gene3D Ribonuclease Inhibitor 588 883 IPR032675 -
Spst3g01961 1271 Pfam Protein kinase domain 970 1248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01961 1271 SUPERFAMILY Protein kinase-like (PK-like) 948 1251 IPR011009 -
Spst3g01961 1271 ProSitePatterns Protein kinases ATP-binding region signature. 971 994 IPR017441 GO:0005524
Spst3g01961 1271 Gene3D Ribonuclease Inhibitor 394 489 IPR032675 -
Spst3g01961 1271 Gene3D Ribonuclease Inhibitor 293 393 IPR032675 -
Spst3g01961 1271 Gene3D Ribonuclease Inhibitor 191 292 IPR032675 -
Spst3g01961 1271 Gene3D Ribonuclease Inhibitor 490 587 IPR032675 -
Spst3g01961 1271 Pfam Leucine rich repeat 521 580 IPR001611 GO:0005515
Spst3g01961 1271 FunFam Uncharacterized protein 395 488 - -
Spst3g01961 1271 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1096 1108 IPR008271 GO:0004672|GO:0006468
Spst3g01961 1271 ProSiteProfiles Protein kinase domain profile. 965 1256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01961 1271 Gene3D Phosphorylase Kinase; domain 1 925 1045 - -
Spst3g01961 1271 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 208 279 - -
Spst3g01961 1271 SUPERFAMILY L domain-like 597 872 - -
Spst3g01961 1271 SMART LRR_typ_2 638 662 IPR003591 -
Spst3g01961 1271 SMART LRR_typ_2 543 567 IPR003591 -
Spst3g01961 1271 SMART LRR_typ_2 302 325 IPR003591 -
Spst3g01961 1271 SMART LRR_typ_2 158 182 IPR003591 -
Spst3g01961 1271 SMART LRR_typ_2 110 134 IPR003591 -
Spst3g01961 1271 SMART LRR_typ_2 495 519 IPR003591 -
Spst3g01961 1271 SMART LRR_typ_2 686 710 IPR003591 -
Spst3g01961 1271 SMART LRR_typ_2 447 471 IPR003591 -
Spst3g01961 1271 SMART LRR_typ_2 254 278 IPR003591 -
Spst3g01961 1271 SMART LRR_typ_2 423 446 IPR003591 -
Spst3g01961 1271 SMART LRR_typ_2 326 350 IPR003591 -
Spst3g01961 1271 SMART LRR_typ_2 782 807 IPR003591 -
Spst3g01961 1271 SMART LRR_typ_2 831 862 IPR003591 -
Spst3g01961 1271 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 203 - -
Spst3g01961 1271 FunFam Leucine-rich repeat receptor-like protein kinase 1046 1268 - -
Spst3g01961 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 926 1045 - -
Spst3g01961 1271 SMART serkin_6 965 1256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01961 1271 SUPERFAMILY L domain-like 45 361 - -
Spst3g01961 1271 SUPERFAMILY L domain-like 295 632 - -
Spst3g01961 1271 Gene3D Transferase(Phosphotransferase) domain 1 1046 1268 - -
Spst3g01961 1271 PANTHER RECEPTOR-LIKE PROTEIN 55 624 1248 - -
Spst3g01961 1271 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Spst3g01961 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 586 878 - -
Spst3g01961 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 295 394 - -
Spst3g01961 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 489 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01961 Spst-Chr3 48222709 48226625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01961 37 711 Receptor kinase-like Gene Family AT1G17750 35.683 7.90e-101 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst3g01961 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01961 - - gmx:100801889 2169.43