Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01947 ATGGTGAACCAACAACCGCAGCTTCAGGTTCAGCCGCAACAGCCCACACCCTCTTCGCAAGACGAGGCCTTGAAGAGGAACACCGATTGTGTGTACTTTCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGGCATAGTGAGTATGCACGAATTAATCCTAGGGATTGTCGTTATTGGTTGAGTGGTAATTGCTTGAATCCCAAATGTTCATTTCGTCATCCGCCCCTTGATGGCTTGTTAGGAACGCAGGCAACAACGGCTGGTGGATCAGCTGTATCTGTGCCCCCTTCACAGATACCAACAGCATCAGCAACACATGCACCTTATAATTCCAGTAAACAAGCTGTGCCATGCTTTTTCTTTCAAAAAGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCATGCATGGACCTCCTGCTCCTAGCACTGGTAATAAAGTAGCTGCTCAGGTTCCAGTTACCAGCCAAGGAGGTGAGAATCCAAATTTTAAGAAGCCTTTTGGCACCGATGAACAATATACTCAGGAAAGGAAAACATCCCAAGGAAATGTTGCAAAGTCAGGTGGAGGCCCTGAACCTAAACCTGCCCAAAAAATTGAATCTGCTCCTCAAAGAAATGTGTTTGAATTGGAGAAGAAAATTGCACTACCCTCTGTAGGATTTGATAATGAGGCTTCTAGATATAAGCCAAGTTCACCACCAGTATCCAATGGCCCTACTGTAGCCCGGTCAAACCGTCTGCATCAAGCTCGTGTGCCAGATGATCACAATTTCCACAGTGGCAAGGACAGTGATGAGTTTCTCAGAGAATCATCTCCTGGGTTTGATGTTCTTGTTGCTGATGAACTTAGGAATTCTGATTACTACCATGGGGAAGATGAATTTGGTAAAGCAAGAGGTCAGGATGAAAGGAACTTAGATAATTTGAACGAATATGATTTAGGAAATTCGGGTGATTATGGTTTAGCAGCTGATATTGATCGGGAAAGATTCCGTATGCCCCAAGGTTATGAGTCGTATGATCACATGCAGGAACCATATGTTTGGGAGCAACGTAGGAAGGCTTCAGCCCATTTAGACAAAAGGTCTCGCCGCAGATCAGACAGTCCTGAAAATGCTGTGGTCTCAGATCTCCGACATCATTTATCCAAGCGCAGAAAGGTCAATGGTTTGAAATCTGTTGTCAGTCATGATTATGCCCTTGAGGGACATGGTGAGGAACAGAGCCAACGGTCCTTCTCCCGAAAGGAGTCACTCCAGTTACCTTTGAATGAGGGCTCCCTCGGTAATCGCTTCCGTGGTAGAATAAAACTTCCAGCCGATGGTGGTGCTGATCAGCTAGAGAGGGATGATAGAGGGAGAAGTAGAGGCAGGTTGTTGTCTGGAAGGTTGCAGGCCACTCACCAGGGAAGGATACATGATAGAATGCGAGGAAGATTGCAAGATGATGAGAGGAGAAACTCCAAGGATCGATTGATGGGGAGAGAACTAATGGGTGGTGATAGGAGTGATTTTGCAGGACCAAAAAGTCTTGCTGAGCTTAAAAATGGGAGGAACACTGACAATAGGGAGCAGCAATCGTTGGGAAAGAGAAGTTTAATAGATGATCACCCATTATCTGAAGATGATGTTCAGTTTGATGGTCCAAAGCCTCTTAGTGAAATTCTGAAGGAGAAGAGAGGAGCTGGAGCCAGAGCTGGTGCAGACTCTGGGAATGGCAAATCATCTGATTTTAAGAATGAAGTTACCAATGGCTCAGATCCTACGCCCGACACAAACACACAAAATGGAGTGCTGTCTGAAACCAAGGAATATGTCAAGAATCAAAATAATGATGAAGAATCCAAGCTTGAGGTCACTGATGCAGCTGGAGGAGACACCGAGGCAACTCATGGTCAATATGAGGATGGAATGTATGATGAAGCCGGTGAAGATCAGTATTATGAAGGTGACGATGCGAGAGAAGCGGACTATGAGTATGAGCAAGGTGATGAGGGATACTATGAGTATGAACAAGGTGAAGAGGGTGAAAATCAAGAGGAAGATTACATGGATGAAGAGGACGGTGATGATTTTGCTAAGAAGATTGGTGTCATTCATTCATAA 2121 0.4498 MVNQQPQLQVQPQQPTPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARINPRDCRYWLSGNCLNPKCSFRHPPLDGLLGTQATTAGGSAVSVPPSQIPTASATHAPYNSSKQAVPCFFFQKGLCLKGDRCAFMHGPPAPSTGNKVAAQVPVTSQGGENPNFKKPFGTDEQYTQERKTSQGNVAKSGGGPEPKPAQKIESAPQRNVFELEKKIALPSVGFDNEASRYKPSSPPVSNGPTVARSNRLHQARVPDDHNFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGQDERNLDNLNEYDLGNSGDYGLAADIDRERFRMPQGYESYDHMQEPYVWEQRRKASAHLDKRSRRRSDSPENAVVSDLRHHLSKRRKVNGLKSVVSHDYALEGHGEEQSQRSFSRKESLQLPLNEGSLGNRFRGRIKLPADGGADQLERDDRGRSRGRLLSGRLQATHQGRIHDRMRGRLQDDERRNSKDRLMGRELMGGDRSDFAGPKSLAELKNGRNTDNREQQSLGKRSLIDDHPLSEDDVQFDGPKPLSEILKEKRGAGARAGADSGNGKSSDFKNEVTNGSDPTPDTNTQNGVLSETKEYVKNQNNDEESKLEVTDAAGGDTEATHGQYEDGMYDEAGEDQYYEGDDAREADYEYEQGDEGYYEYEQGEEGENQEEDYMDEEDGDDFAKKIGVIHS 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01947 706 MobiDBLite consensus disorder prediction 447 463 - -
Spst3g01947 706 Pfam RNA-binding, Nab2-type zinc finger 122 142 - -
Spst3g01947 706 Gene3D - 15 81 - -
Spst3g01947 706 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Spst3g01947 706 MobiDBLite consensus disorder prediction 578 610 - -
Spst3g01947 706 Pfam Zinc-finger containing family 25 80 IPR041686 -
Spst3g01947 706 MobiDBLite consensus disorder prediction 1 22 - -
Spst3g01947 706 MobiDBLite consensus disorder prediction 473 503 - -
Spst3g01947 706 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Spst3g01947 706 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Spst3g01947 706 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Spst3g01947 706 FunFam Zinc finger CCCH domain-containing protein 17 18 81 - -
Spst3g01947 706 Gene3D - 113 187 - -
Spst3g01947 706 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Spst3g01947 706 MobiDBLite consensus disorder prediction 672 694 - -
Spst3g01947 706 MobiDBLite consensus disorder prediction 158 210 - -
Spst3g01947 706 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Spst3g01947 706 SUPERFAMILY CCCH zinc finger 118 142 IPR036855 GO:0046872
Spst3g01947 706 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 21 704 - -
Spst3g01947 706 MobiDBLite consensus disorder prediction 611 626 - -
Spst3g01947 706 MobiDBLite consensus disorder prediction 406 646 - -
Spst3g01947 706 MobiDBLite consensus disorder prediction 158 191 - -
Spst3g01947 706 MobiDBLite consensus disorder prediction 672 693 - -
Spst3g01947 706 MobiDBLite consensus disorder prediction 521 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01947 Spst-Chr3 46301376 46304830 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst3g01947 zf-CCCH_3 5e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01947 - - gmx:102669253 1073.54