Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01938 ATGGTTTTTCCAAAACCTTCTTCTGAGTCTGACCTCTTTCTTTATTCCAATTTTGCTTCTCCTTATGCTAGGGACTCTCTTCCCAGGTTCAGTATGCCCGAGAACTCCATGCCTAAAGAAGTTGCTTACCAGAACATACACGATGAGTTGCAGCTTGATGCCATTCCAAAGCTTAACTTGGCTTCCTTTGTCACCACTTCCATGGAGGAAGAGTGCAACAAGCTCATCATGGAATCTATCAACAAGAACTATGTAGACATGGACGAGTATCCTGCCACCACTGACCTTCACAATCGATGCGTGAACATGATAGCACGTTTGTTCCATGCTGAAATAGAAGAAAATGAGAATGCAGTTGGAGCAGGAACTGTGGGATCATCAGAGGCCATAATGCTGGCAGGGCTTGCATTCAAGAAGAAGTGGCATAACAAGCGGAAGGCAGAGGGTAAGGCATACGATAAGCCTAATTTGGTCACTGGTTCCAACGTGCAAGTATGTTGGGAGAAATTTGCCAGGTATTTTGAGGTGGAGTTGAGGGAAGTGGAGGTGAGAGAAGGGTACTACGTCATGGACCCTGCTAAAGCAGTTGAATTGGTTGATGAGAACACTATTTGTGTGGCTGCAATCTTGGGTTCAACTTACAATGGAGAGTTCGAAGATGTGAAGCTCCTCAATGATCTACTACTACAAAAAAACAAGCAAACTGGCTGGGATACGCCTATTCATGTGGATGCTGCTAGTGGTGGTTTTATTGCTCCTTTCCTTTATCCAGAGCTAGAGTGGGATTTCAGACTCCCATTGGTGAAGAGCATTAATGTGAGTGGCCACAAATATGGACTTGTTTATGCTGGTATTGGTTGGGTTATTTGGAGGAGCAAGGAGGACTTGCCAGAAGACCTTGTCTTCCATATTAATTACCTTGGAGCTGACCAACCCACCTTCACCCTCAATTTCTCTAAAGGTTCTAGTCAAATTATTGCTCAATATTATCAGTTAATTCGCCTTGGACAAGAGGGTTACCGAAGCATAATGGAGAACTGCAGAGAAAATGCAATGGTGCTGAAGGAAAATTTGGAGAAGAGTGGACGCTTTAGCATACTCTCAAAAGACAATGGTGTTCCTGTGGTGGCATTTTGTCTGAAAGACAGAAGCCAGTACGATGAGTACAAGATATCAGAGATGTTGCGCCGCCACGGTTGGATCGTGCCAGCTTATCCAATGCCACCTGCTGCTCAACACGTCAATGTACTCCGTGTGGTGATCAGGGCCGAGTTTTCACGCACCCTTGCTCAACGCCTTGTGTTTGACATATACAATGTGATGCATGAACTTGATAAACTACATCCTCCCAAAGTCATCAACAACATTAAGGAAGAGAACAAGGGCTTGGTTGAAAGTGGAGTTAAGAACACTGTATTGGATGCACATCGGGAAATCATTGCTCATGAATCAAACAAGCGTCAGAAAATCATGGCTGCATAG 1482 0.444 MVFPKPSSESDLFLYSNFASPYARDSLPRFSMPENSMPKEVAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPATTDLHNRCVNMIARLFHAEIEENENAVGAGTVGSSEAIMLAGLAFKKKWHNKRKAEGKAYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPAKAVELVDENTICVAAILGSTYNGEFEDVKLLNDLLLQKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRSIMENCRENAMVLKENLEKSGRFSILSKDNGVPVVAFCLKDRSQYDEYKISEMLRRHGWIVPAYPMPPAAQHVNVLRVVIRAEFSRTLAQRLVFDIYNVMHELDKLHPPKVINNIKEENKGLVESGVKNTVLDAHREIIAHESNKRQKIMAA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01938 493 CDD DOPA_deC_like 59 437 - -
Spst3g01938 493 NCBIfam glutamate decarboxylase 17 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Spst3g01938 493 Gene3D - 66 360 IPR015421 GO:0003824
Spst3g01938 493 PANTHER GLUTAMATE DECARBOXYLASE 7 485 IPR010107 GO:0004351|GO:0006536|GO:0030170
Spst3g01938 493 Gene3D - 361 447 - -
Spst3g01938 493 FunFam Glutamate decarboxylase 361 448 - -
Spst3g01938 493 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Spst3g01938 493 SUPERFAMILY PLP-dependent transferases 14 444 IPR015424 -
Spst3g01938 493 FunFam Glutamate decarboxylase 4 65 - -
Spst3g01938 493 Gene3D - 1 65 - -
Spst3g01938 493 FunFam Glutamate decarboxylase 66 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01938 Spst-Chr3 45850478 45852724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01938 1 481 Calmodulin-binding Proteins AT5G17330 75.359 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01938 K01580 - gmx:100782330 933.71