Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01932 ATGTCTTTGGCTGCACGAAGTTCCCTTTTGAAGGTTGAAGAAATACAAGGAAGAGGGAGGGGAATGGTTGCATCTCAGCCTATTAAAGCTGGTCAAATTGTTCTAAGAGACTCTCCCATTCTGCTGTATTCAGCTTTGCCCTTGATTAGACAGTCCTTGTCGTCGTCCTCTTCCTCAACGTCATGTTTCTGTGATCACTGCTTCAGAATCTTGCCTCCAATTTTACAGGGAGATACTTCATCATCCACAGTTTTTTGTCCTAATTGTTGCCACCACCGTTTCTGCAGCTCAACTTGTCTTTCAAAGGCATTGAACTCCTCCCATTCTTCTTGGGTATGTCAAGCATTATCTTGTCTCAGAGCCAATTCTCCCCTGCTTGAACAGCCCCTTGAGCTCCAAGTCCAAGCTAATTTTCTCATAGCTGCCTACAATCTTGCAAATATCTCCCCTTCAGACTTTCAAATTTTGCTATCTCTTCAGGGTTCTCCTGATGATAGTATCATTGCCGCAGCTCAGTTCCTACACCCCGTTATTTCATCCCTCTGCCCACCTTCTTTCGTTAGTCCGCAGAATGGATTTTCTTTAGAACTGACTTCTACACTTCTTGTCAAGGACAAGCTCAATGCCTTTGGAATAATGCAGCCCTTCTCTTCAGATGATGACCAGAGATCTGTCAGAGCTTATGGTATTTACCCCTATGCTTCGTTTTTTAACCATGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGACGCCAATCCACCTGATGGCTGCCATAATACTGACTTTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGGGAGATCTGTTTGAGTTATTTCCCTGTGAATGAAAACTATTCTAGTAGGCAAAAAAGATTGATTGAAGACTATGGCTTCACCTGTAATTGTGATCGATGTAATGTGGAGTCTAATTGGTCAGATAATGATAGTGTTGAAGATAATGCTGAGGATGAAGAGGAGGTTATGGATGAGGACCAATATGAAACTATGGCAGCGTCAGACACTGGCAATCATGCCCTTGAAGATAACAATGATTTCCCACATTCTTATTTCTTTTTAAGATACATGTGTGATAGATTGAATTGCTGGGGAACATTAGCTCCTTTACCTCCTCAGGGTGATACCCCATCTAATGTCATGGAATGCAATGTCTGTGGCAAATTGAAGAATGGCGATACCTTTGATACTGATGAAGTTCTTATGGAGGACTAA 1242 0.4211 MSLAARSSLLKVEEIQGRGRGMVASQPIKAGQIVLRDSPILLYSALPLIRQSLSSSSSSTSCFCDHCFRILPPILQGDTSSSTVFCPNCCHHRFCSSTCLSKALNSSHSSWVCQALSCLRANSPLLEQPLELQVQANFLIAAYNLANISPSDFQILLSLQGSPDDSIIAAAQFLHPVISSLCPPSFVSPQNGFSLELTSTLLVKDKLNAFGIMQPFSSDDDQRSVRAYGIYPYASFFNHDCLPNACRFDYVDANPPDGCHNTDFIIRMIHDVPQGREICLSYFPVNENYSSRQKRLIEDYGFTCNCDRCNVESNWSDNDSVEDNAEDEEEVMDEDQYETMAASDTGNHALEDNNDFPHSYFFLRYMCDRLNCWGTLAPLPPQGDTPSNVMECNVCGKLKNGDTFDTDEVLMED 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01932 413 Gene3D - 63 122 - -
Spst3g01932 413 Pfam SET domain 19 282 IPR001214 GO:0005515
Spst3g01932 413 SUPERFAMILY ARM repeat 46 357 IPR016024 -
Spst3g01932 413 SMART set_7 8 289 IPR001214 GO:0005515
Spst3g01932 413 Gene3D - 123 209 - -
Spst3g01932 413 CDD SET_SMYD 207 309 - -
Spst3g01932 413 ProSiteProfiles SET domain profile. 8 283 IPR001214 GO:0005515
Spst3g01932 413 Gene3D SET domain 21 309 IPR046341 -
Spst3g01932 413 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 1 408 IPR044238 -
Spst3g01932 413 SUPERFAMILY SET domain 10 310 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01932 Spst-Chr3 44965283 44966524 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst3g01932 SET 6.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01932 - - gmx:100783406 725.702