Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01917 ATGAAAGGGTTCCCAAAGCAAGAATGTGAAAGGCTCAAAAGACTCTCTTCCCAGACCTGTGTGTTCTGGCTTTGTACAAGGCTTGTTTTCTCAATGGAGAACAACCATGTTCAGCTTTTGCCTCATCTCACTGTGACACTTCTTCTTGTGATCACTGTTTTGTTTCCTGTGACTGAAGTTGCGGCCGTTTCCTCCGTCAAGACTGATGCACAGGCTCTTCTCATGTTCAAAAGGTTGATTCAGAAGGATCAAAGTGGGGTTTTGTCAGGTTGGAAGCTGAATAAGAATCCATGTAGCTGGTATGGAGTCTCTTGCAACCTTGGAAGAGTTACTCAGCTCGATATTAGCGGGAATAATACCCCTGCTGGGACTATATCTCTTGACCCTTTGTCTTCTTTAGATATGTTATCTGTTCTGAAACTGTCTTTCAATTCATTTTCTGTAAATTCTACCTCTTTGCTTCAGCTCCCATATAGTTTGACACAGCTTGATCTATCCTTTGGAAGAGTTATAGGCCCTGTCCCTGAGAACCTTTTCTCCAAGTGTCCAAATCTTGTTGTTGTTGATCTTTCTTATAACAACTTAACAGGCCCTATTCCTGAAAATTTCTTCCAAAATACTGATAAACTGCAGACCCTTGACCTCTCTTCCAACAACCTGTCAGGGTCTATTTTTGGCCTAAAAATGGAGTGCATTTCCTTGTTGCAACTTGATCTATCTGGAAACCGTTTGTCAGACTCAATTCCATTCTCTTTGTCAAACTGCACCAGCCTTAAAAGTTTGAATTTGGCCAACAATATGATTTCTGGGGAAATTCCTAAAACTTTGGGTCAGCTAAACAAATTACAGACTCTTGATCTTTCCCACAACCAACTCACTGGCTGGATCCCTTCTGAATTGGGAAATGCATGTTCTTCCCTTTTGGAGCTTAAACTTTCTTTCAACAACATCTCAGGCTCAATCCCATCTGGTTTCTCCTCGTGCACTTGGCTGCAACTTCTTGACATATCCAACAACAATATGTCAGGACCGTTAGCAGATTCAATCTTTCAGAACCTTGGATCATTGCAGGAATTGAGGCTGGGGAATAATGCTATCACAGGTCAATTTCCATCTTCAATATCTTCCTGCAAAAATTTGAAGATTGTGGACTTCAGCTCAAACAAAATTTATGGATCTATCCCCAGGGATTTATGTCCAGGGACAGCCTCACTTGAGGAGCTGAGAATGCCAGATAATCTTATTACAGGCGAAATCCCAGCTGAACTGTCAAAGTGCTCACAGCTGAAGACACTTGATTTTAGTCTGAACTATCTCAATGGTACAATTCCTGATGAGCTTGGACAACTTGAAAATCTTGAGCAGCTAATAGCATGGTTCAATGGCTTGGAAGGTAAAATTCCACCAAAGCTGGGCCAGTGCAAGAATCTTAAGGATCTCATACTGAATAATAATCATCTCACTGGTGAAATTCCCATTGAGTTGTTCAATTGCAGCAATCTTGAATGGATATCACTGACAAGCAATGAGCTTAGTGGTGAAATACCGCGTGAGTTTGGTCTCTTGACGAGGTTAGCAGTTCTGCAGCTCGGAAACAACAGCTTGACTGGCGAGATACCGGCAGAGCTGGCGAATTGCAGCAGTTTGGTGTGGGTGGACTTGAACAGCAACAAGCTCACTGGAGAGATCCCTCCAAGACTTGGAAGACAGCTAGGAGCAAAATCCTTGTTTGGGATCCTTTCAGGGAACACTTTGGTGTTTGTAAGAAATGTTGGAAACTCATGCAAAGGAGTTGGAGGTTTGCTGGAATTCTCTGGTATTCGACCTGAAAGACTCTTGCAGGTCCCAACATTGAGGACTTGTGACTTCACAAGACTCTATTCTGGTCCTGTCCTCAGCTTGTTCACGAAGTACCAGACTCTGGAGTATCTTGATCTTTCTTATAATGAGCTTCGTGGAAAAATCCCAGATGAATTTGGAGATATGGTGGCTTTACAGGTTCTTGAATTATCTCACAATCAGCTATCTGGAGAAATACCTTCAACACTTGGTCAGCTCAAAAATTTGGGTGTGTTTGATGCATCACACAATAGACTGCAGGGTCATATTCCAGATTCATTCTCAAACCTCTCATTCTTAGTGCAAATTGATCTATCTAACAATGAGTTGACAGGGCAAATTCCATCTAGGGGACAACTAAGTACACTTCCAGCTTCCCAGTATGCAAATAACCCTGGTCTCTGTGGTGTACCACTGCCTGATTGCAAGAATGACAACAGCCAGCCCACAACAAATCCAACTGATGATGTTGGTAAAGGGGGGCATAAGACAGCAACTGCAACATGGGCAAACAGCATTGTCATGGGAATTCTTATCTCTGTTGCCTCTGTGTGTATTATAATTGTTTGGGCAATTGCAATGCGCGCAAGGAGGAAGGAAGCCGAAGAAGTCAAGATGCTCAATAGCTTACAAACATGCCACGCTGCTACAACATGGAAAATTGACAAAGAGAAAGAGCCCTTAAGCATCAATGTTGCAACGTTTCAGAGGCAGCTGAGGAAACTCAAGTTCTCCCAGCTGATTGAAGCAACTAATGGCTTCTCAGCAGCAAGCCTGATTGGGTGTGGTGGTTTTGGTGAAGTGTTCAAGGCCACACTCAAAGATGGGTCAAGTGTCGCCATAAAGAAGCTCATTCGACTGAGCTGCCAGGGTGATCGAGAATTCATGGCAGAGATGGAAACCTTGGGGAAGATCAAGCACAGAAATCTTGTTCCTCTGTTGGGGTACTGCAAAGTTGGGGAAGAGAGGCTCCTTGTTTATGAATACATGGAGTATGGAAGCCTAGAAGAGATGCTTCATGGGAGAATCAAGACTCGTGATCGCCGCATTTTGACATGGGAAGAAAGGAAAAAGATTGCAAGAGGTGCAGCTAAAGGGCTTTGTTTCCTGCACCACAATTGCATCCCTCACATCATACACAGAGATATGAAATCAAGCAATGTGCTACTTGACCATGAAATGGAATCCAGGGTCTCGGATTTTGGAATGGCAAGACTTATAAGTGCCCTTGATACACATCTTAGTGTGAGCACACTGGCAGGAACACCAGGATATGTTCCCCCAGAGTACTATCAAAGTTTCAGGTGCACTGCCAAGGGAGATGTCTACTCATTTGGAGTTGTAATGTTGGAACTTCTTAGTGGTAAACGCCCTACTGACAAGGAGGACTTCGGGGACACCAACTTGGTTGGGTGGGCCAAGATGAAGGTCCGTGAAGGTAAGCAAATGGAAGTAATTGACACAGACTTGCTTTTGGCCACTCAAGGAACCGATGAGGCAGAAGCCAAAGAAGTGAAGGAGATGATAAGATATTTAGAGATTACTTTGCAGTGTGTTGATGACTTGCCTTCAAGAAGGCCAAACATGTTGCAGGTAGTGGCCATGCTGAGAGAGCTTATGCCTGGATCAACTGATGGAAGCAGCAACAGTGCTTGA 3495 0.4366 MKGFPKQECERLKRLSSQTCVFWLCTRLVFSMENNHVQLLPHLTVTLLLVITVLFPVTEVAAVSSVKTDAQALLMFKRLIQKDQSGVLSGWKLNKNPCSWYGVSCNLGRVTQLDISGNNTPAGTISLDPLSSLDMLSVLKLSFNSFSVNSTSLLQLPYSLTQLDLSFGRVIGPVPENLFSKCPNLVVVDLSYNNLTGPIPENFFQNTDKLQTLDLSSNNLSGSIFGLKMECISLLQLDLSGNRLSDSIPFSLSNCTSLKSLNLANNMISGEIPKTLGQLNKLQTLDLSHNQLTGWIPSELGNACSSLLELKLSFNNISGSIPSGFSSCTWLQLLDISNNNMSGPLADSIFQNLGSLQELRLGNNAITGQFPSSISSCKNLKIVDFSSNKIYGSIPRDLCPGTASLEELRMPDNLITGEIPAELSKCSQLKTLDFSLNYLNGTIPDELGQLENLEQLIAWFNGLEGKIPPKLGQCKNLKDLILNNNHLTGEIPIELFNCSNLEWISLTSNELSGEIPREFGLLTRLAVLQLGNNSLTGEIPAELANCSSLVWVDLNSNKLTGEIPPRLGRQLGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLLQVPTLRTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGKIPDEFGDMVALQVLELSHNQLSGEIPSTLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPASQYANNPGLCGVPLPDCKNDNSQPTTNPTDDVGKGGHKTATATWANSIVMGILISVASVCIIIVWAIAMRARRKEAEEVKMLNSLQTCHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKMKVREGKQMEVIDTDLLLATQGTDEAEAKEVKEMIRYLEITLQCVDDLPSRRPNMLQVVAMLRELMPGSTDGSSNSA 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01917 1164 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 633 755 - -
Spst3g01917 1164 PRINTS Leucine-rich repeat signature 210 223 - -
Spst3g01917 1164 PRINTS Leucine-rich repeat signature 279 292 - -
Spst3g01917 1164 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 331 1149 - -
Spst3g01917 1164 CDD STKc_IRAK 873 1152 - -
Spst3g01917 1164 ProSitePatterns Protein kinases ATP-binding region signature. 873 896 IPR017441 GO:0005524
Spst3g01917 1164 Pfam Protein tyrosine and serine/threonine kinase 871 1149 IPR001245 GO:0004672|GO:0006468
Spst3g01917 1164 SUPERFAMILY L domain-like 605 751 - -
Spst3g01917 1164 Gene3D Ribonuclease Inhibitor 107 755 IPR032675 -
Spst3g01917 1164 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 302 394 - -
Spst3g01917 1164 SUPERFAMILY Protein kinase-like (PK-like) 848 1149 IPR011009 -
Spst3g01917 1164 SMART LRR_typ_2 522 546 IPR003591 -
Spst3g01917 1164 SMART LRR_typ_2 353 377 IPR003591 -
Spst3g01917 1164 SMART LRR_typ_2 450 474 IPR003591 -
Spst3g01917 1164 SMART LRR_typ_2 475 498 IPR003591 -
Spst3g01917 1164 SMART LRR_typ_2 662 686 IPR003591 -
Spst3g01917 1164 SMART LRR_typ_2 182 206 IPR003591 -
Spst3g01917 1164 SMART LRR_typ_2 304 328 IPR003591 -
Spst3g01917 1164 SMART LRR_typ_2 279 303 IPR003591 -
Spst3g01917 1164 SMART LRR_typ_2 133 156 IPR003591 -
Spst3g01917 1164 FunFam serine/threonine-protein kinase BRI1-like 2 68 180 - -
Spst3g01917 1164 Pfam Leucine rich repeat 159 220 IPR001611 GO:0005515
Spst3g01917 1164 Pfam Leucine rich repeat 234 292 IPR001611 GO:0005515
Spst3g01917 1164 Pfam Leucine rich repeat 634 675 IPR001611 GO:0005515
Spst3g01917 1164 ProSiteProfiles Protein kinase domain profile. 867 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01917 1164 SUPERFAMILY L domain-like 68 343 - -
Spst3g01917 1164 SMART serkin_6 867 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01917 1164 Pfam Brassinosteroid receptor island domain 577 635 IPR045381 -
Spst3g01917 1164 Pfam BspA type Leucine rich repeat region (6 copies) 321 415 IPR026906 -
Spst3g01917 1164 Gene3D Transferase(Phosphotransferase) domain 1 943 1161 - -
Spst3g01917 1164 FunFam LRR receptor-like serine/threonine-protein kinase 229 301 - -
Spst3g01917 1164 Gene3D Phosphorylase Kinase; domain 1 826 942 - -
Spst3g01917 1164 Gene3D - 580 636 - -
Spst3g01917 1164 SUPERFAMILY RNI-like 271 565 - -
Spst3g01917 1164 FunFam serine/threonine-protein kinase BRI1-like 2 828 942 - -
Spst3g01917 1164 ProSiteProfiles Leucine-rich repeat profile. 209 231 IPR001611 GO:0005515
Spst3g01917 1164 FunFam serine/threonine-protein kinase BRI1-like 2 943 1160 - -
Spst3g01917 1164 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 399 586 - -
Spst3g01917 1164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 991 1003 IPR008271 GO:0004672|GO:0006468
Spst3g01917 1164 ProSiteProfiles Leucine-rich repeat profile. 281 302 IPR001611 GO:0005515
Spst3g01917 1164 Pfam Leucine rich repeat N-terminal domain 67 106 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01917 Spst-Chr3 44007078 44013455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01917 47 1152 Receptor kinase-like Gene Family AT1G55610 48.094 0.0 1003
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Spst3g01917 PK_Tyr_Ser-Thr 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01917 - - gmx:100305360 2121.67