Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01906 ATGGAGGTCAGATCCTGGGGTTTTCGTTCTGCGGCGATTAGATCGAGCAAGTTCCGATTTTTGAACACAGAAGCGGTAAATCGGGATCTGTTTGAGCCTGATATGAGAATTTGGTGGTTGATTGTGCTTATAGTTCACATTGTGATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAACCCTTCAGAGGGGGACATCTTGGTCTGCAGCTGATGCCTGGTATGACTGATCGAGACCCAAAGCCATATTTGCCTGGTCGTGATCCAGCTATGTTAATGGGTGCAAATGGAGCTTTTCACCCTCGAGATTGCGTTGTTTCCGAAGCACCAATGCAGTTAAACTATGTCAGAGATAATTGGATAAGCCAGAGGGATAGGTATTTCAATATGCAGCAGCCCACAAATCCTAATTATGTTGTTCTTCCAGAAACATCAGGAGCTCCCACCTTGCAAATTATACAACCACCCGATACATCAAGAGATGAGAAAGTGGATAAAATTGAAGAGTTAGTTGTCAAAAAGGAAGGTGGTCAGTCCAAGAAAAGGCAAACTAAGGGTGCTCTGACGACTCCGAAAGCTAAGAAACCTAGGAAACCAAAGGATAATAACAATGTTCCAGTTCAACGTGTGAAGCCACCGAAGAAGACTATGGAGCTTGTAATTAATGGAATTGATATGGACATTTCTGGTCTACCCATTCCAGTTTGTTCGTGTACTGGGAGTCCTCAGCAGTGTTATCGTTGGGGCTGTGGAGGTTGGCAATCGGCTTGTTGCACCACAAATGTGTCGATATATCCATTGCCAATGAGCATGAAAAGGCGTGGTGCTAGGATAGCTGGGAGGAAAATGAGCCAAGGTGCTTTTAAGAAGGTTTTAGAGAAGCTTGCGGCTGAAGGGTATAATTTTGCTAATCCGATAGATCTGAAGACTCATTGGGCTAGACATGGCACCAACAAGTTTGTCACTATCAGGGTTTTAGATGTTGCACAATTGGGGAGCTCTAGTGGGACTTAA 1023 0.4418 MEVRSWGFRSAAIRSSKFRFLNTEAVNRDLFEPDMRIWWLIVLIVHIVMDDDVLNMPNWGYYEPFRGGHLGLQLMPGMTDRDPKPYLPGRDPAMLMGANGAFHPRDCVVSEAPMQLNYVRDNWISQRDRYFNMQQPTNPNYVVLPETSGAPTLQIIQPPDTSRDEKVDKIEELVVKKEGGQSKKRQTKGALTTPKAKKPRKPKDNNNVPVQRVKPPKKTMELVINGIDMDISGLPIPVCSCTGSPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIRVLDVAQLGSSSGT 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01906 340 SMART GAGA_bind_2 49 327 IPR010409 -
Spst3g01906 340 MobiDBLite consensus disorder prediction 176 214 - -
Spst3g01906 340 Pfam GAGA binding protein-like family 49 327 IPR010409 -
Spst3g01906 340 PANTHER - 49 327 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01906 Spst-Chr3 42938713 42940661 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01906 49 327 BBR or BPC Transcription factor family AT2G01930 57.047 6.39e-107 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Spst3g01906 GAGA_bind 4.8e-104 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01906 - - gmx:100791533 530.406