Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01893 ATGGGTCGTGGAAGGATACCCATGGATCTCATTGAGAAAGAAAAGGCTCGGAAAACAACATTTCAAAAGCGAAAGACCGGATTAATCAAGAAAGTTTATGAGTTTTCCACCCTTTGTTCAGTTGATGTTGGTGTAATTATCTTTGCCTCCAAGTATCTTGATGAACCTGAAACATGGCCACAAGATCCAAGAGAGGTTAACCTTGTTATTCAAAAATATCTGAACACCACCAGTGATAGGCGTCCAAAGGTGTATGATGTGGAAGAGTATTTCAGTGAAAGAATGAAAAGGATTGAAGGTGAGATTTCCAAAGTGCAGAAAGAGAAGATCCAACTCATGTACCCAACCTGGGATGACTCTTACAATGTTCTTGAAGAGGAACAACTGAGGATGTTTCTTAGTATTTTGGACGCTAAGCTTAATGCTTGTAACCAAAGGATGAATATGTTGAAGCTAGAGTCAAAGGGAAAAACAATAACAGACAAAGATGATCTACTTGTTCCCTCAGTAGCCCCAAATAGCCATCACAATTTTATGCAGAACGTGTCTCAAACACAAATTTTCCCTCTTAATGATAACAGTCAAGTTCCATTTTATCCATGTCATCCAAGCCAAAGTTCTCTTTCTTCTTTGTTTCATTTTGGTCAAAATTGTACGCAATTGATGGAAAAGAATACAATGGTGGATTGGGGTCATCAGGTTGGGGCTGCTACAAGTGATCACAAACTGGTTATACAACAGGAGGATCGATCCGACAAAAACCAAAACTCCTCACATTGTTATTACAATGGAAATATGCAAACAACGCAGCCATATAACAATGTTTCTTTTCAGTACGATGCAGTTTTCCAGAACTTATCAAATCAAGCAGGACCATCACAAGGATTTGAACCTAATGGTTTTGATGATTCAACTATGTTTCAACCTTATTTTTTCAACTCTCTTCATAGAAGAAAGTAG 960 0.3802 MGRGRIPMDLIEKEKARKTTFQKRKTGLIKKVYEFSTLCSVDVGVIIFASKYLDEPETWPQDPREVNLVIQKYLNTTSDRRPKVYDVEEYFSERMKRIEGEISKVQKEKIQLMYPTWDDSYNVLEEEQLRMFLSILDAKLNACNQRMNMLKLESKGKTITDKDDLLVPSVAPNSHHNFMQNVSQTQIFPLNDNSQVPFYPCHPSQSSLSSLFHFGQNCTQLMEKNTMVDWGHQVGAATSDHKLVIQQEDRSDKNQNSSHCYYNGNMQTTQPYNNVSFQYDAVFQNLSNQAGPSQGFEPNGFDDSTMFQPYFFNSLHRRK 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01893 319 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst3g01893 319 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst3g01893 319 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst3g01893 319 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Spst3g01893 319 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Spst3g01893 319 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 197 - -
Spst3g01893 319 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Spst3g01893 319 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Spst3g01893 319 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Spst3g01893 319 CDD MADS_SRF_like 2 73 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01893 Spst-Chr3 40327267 40328226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01893 1 146 Type I MADS-box Gene Family AT5G55690 35.762 4.73e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g01893 SRF-TF 3.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01893 - - gmx:102660566 395.201