Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01885 ATGGTGAAGTACTCAAGGGAGCCGGACAATCCTACCAAGTCTTGCAAGGCTAGAGGCGCGGACCTTAGGGTTCATTTCAAGAATACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAACAGGCCATTCCATTCAGACGATTTTGCCGTGGTGTTGGAAGGACAGCTCAAGCCAAGAATAGACACTCTAATGGCCAAGGAAGGTGGCCTGTTAAATCAGCCAAATTCATCCTTGATTTGCTTAAGAATGCCGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGTGCTATACATTTCCCATATCCAAGTCAATCAAGCACAGAAGCAAAGGCGTCGAACGTATCGAGCTCATGGAAGAATCAATCCTTATATGTCATCACCGTGCCACATAGAGTTGATATTGTCGGAAAGGGACGAGCCTGTTAGGAAGGAGCCCGAGACAAAGTTGACCACAAGCAAGAAGTCCCAAGCTCTTCGAAGTGGTGCCTCTTCTTAG 546 0.4652 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDVLYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERDEPVRKEPETKLTTSKKSQALRSGASS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01885 181 NCBIfam 50S ribosomal protein L22 4 153 IPR005721 GO:0003735|GO:0006412|GO:0015934
Spst3g01885 181 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Spst3g01885 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 174 IPR005721 GO:0003735|GO:0006412|GO:0015934
Spst3g01885 181 FunFam 60S ribosomal protein L17 1 175 - -
Spst3g01885 181 MobiDBLite consensus disorder prediction 154 181 - -
Spst3g01885 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Spst3g01885 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Spst3g01885 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Spst3g01885 181 SUPERFAMILY Ribosomal protein L22 1 153 IPR036394 GO:0003735|GO:0005840|GO:0006412
Spst3g01885 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01885 Spst-Chr3 39418132 39420652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01885 1 181 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 85.083 5.82e-115 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01885 K02880 - gmx:100816536 358.992