Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01883 ATGGACCGAACCAGAGATAGGGATGAAGCGGGGCGCCAACAGCTTGGTTCCAGCTCAGGAACCTCAAGCTGCGGAAAATCGAACCTTTGGAAGGAGGAAGGAGGCATGGACGAGCTTCTCGCTGTGGTGGGTTACAAGGTGAGGTCCTCTGATATGGCGGAAGTGGCGCAGAAGCTGGAGCGTCTTGATGAAGCTATGGAAAACGTTCAAGACAGTCTCACGGAACATTCAAACGATGCCTTTTATTACAACCCCTCTGACATCTCCAATTGGCTCGAGACCATGCTTTACAATTTCGACTCCCATCCTCCAGAAGAATCAAATAAGGACTCCGCCTCCTCCGACTACGATCTCAAGGCTATTCCCGGGAAAGCAATCTACGACGGTGGTGTTAGTACTACGTCAAACCCTAAGCGCCTCAAATCTGTTGAGTCAACGAGCACGGTTGTGGTCGTTGACTGGCAAGAGAACGGGATCCGCCTCGTGCACAGCCTGATGGAGTGTGCGGAGGCCGTCGAAAACAACAACCTCCCCGTGGCGGAGGCGCTGGTGAAGCAGATCGGATTCCTTGCTTTGTCGCAGGTCGGAGCTATGCGGAAAGTCGCCACCTACTTCGCGGAAGCACTCGCAAGGCGAATCTACCACGTTTTCCCTCTCCAGCACTCGCTCTCCGACACGCTTCAGACTCACTTCTACGAATCCTGTCCTTATCTCAAATTCGCTCACTTCACTACCAACCAGGCTATTCTCGAAGCTTTCCAAGGGAAAAGCCGCGTTCACGTCATAGATTTCGGAATCAACCAGGGGATGCAGTGGCCGGCACTGATGCAAGCCCTAGCTCTTCGTACCGGCGGTCCTCCTGCTTTCCGGCTCACCGGAATCGGACCTCCCGCAGCAGATAACTCTGACCACCTCCAGGAAGTTGGATCGAAGCTGGCACAGTTTGCGGAGACGATTCACGTGCAGTTCGAGTACCACGGCTTCGTCGCCAACTGTCTGACCGATCTCGACGTATCCATGCTCGACCTCCGAGAAGATGAATCCGTAGCACTTAACTCCGTCTTCGAGTTTCACAAGCTCCTCGCGCGCCCCGGCGCCGTCGAGAAGGTCCTCTCTGTTGTCCGACAGATTCGGCCGGAGATTCTGACCGTGGTGGAGCAAGAAGCGAATCACAACGGACTGAGTTTTCTGGACCGGTTCACTGAGTCGCTGCACTATTATTGCACTTTGTTCGACTCGCTGGAGGTTTCACCTGTGAATCCACAGGATAAGGCGATGTCGGAGGTTTACTTGGGAAAACAAATCTGTAACGTGGTGTCCTGCGAGGGAATGGATCGCGTGGAACGGCACGAGACCCTAAACCAATGGCGGAACCGGTTCAGTTCTGCCGGGTTTTCTCTCATTCATTTGGGTTCCAACGCGTTCAAACAGGCTAGCATGTTGCTCGCGCTCTTTGCTGGTGGGGATGGGTATAAGGTGGAGGAGAACAATGGGTGTCTAATGCTGGGATGGCACACAAGGGCCTTGATTGCCACATCCGCGTGGCAACTCGCTGCAAAATCGGTGGTTACGCTCTGA 1578 0.5412 MDRTRDRDEAGRQQLGSSSGTSSCGKSNLWKEEGGMDELLAVVGYKVRSSDMAEVAQKLERLDEAMENVQDSLTEHSNDAFYYNPSDISNWLETMLYNFDSHPPEESNKDSASSDYDLKAIPGKAIYDGGVSTTSNPKRLKSVESTSTVVVVDWQENGIRLVHSLMECAEAVENNNLPVAEALVKQIGFLALSQVGAMRKVATYFAEALARRIYHVFPLQHSLSDTLQTHFYESCPYLKFAHFTTNQAILEAFQGKSRVHVIDFGINQGMQWPALMQALALRTGGPPAFRLTGIGPPAADNSDHLQEVGSKLAQFAETIHVQFEYHGFVANCLTDLDVSMLDLREDESVALNSVFEFHKLLARPGAVEKVLSVVRQIRPEILTVVEQEANHNGLSFLDRFTESLHYYCTLFDSLEVSPVNPQDKAMSEVYLGKQICNVVSCEGMDRVERHETLNQWRNRFSSAGFSLIHLGSNAFKQASMLLALFAGGDGYKVEENNGCLMLGWHTRALIATSAWQLAAKSVVTL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01883 525 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 111 512 IPR005202 -
Spst3g01883 525 Coils Coil 52 79 - -
Spst3g01883 525 MobiDBLite consensus disorder prediction 13 28 - -
Spst3g01883 525 Pfam GRAS domain family 161 516 IPR005202 -
Spst3g01883 525 SMART DELLA_2 37 109 - -
Spst3g01883 525 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Spst3g01883 525 MobiDBLite consensus disorder prediction 1 30 - -
Spst3g01883 525 Pfam Transcriptional regulator DELLA protein N terminal 37 103 IPR021914 -
Spst3g01883 525 ProSiteProfiles GRAS family profile. 152 516 IPR005202 -
Spst3g01883 525 Gene3D - 35 99 IPR038088 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01883 Spst-Chr3 39353129 39354967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01883 26 518 GRAS Transcription Factor Family AT1G14920 66.983 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst3g01883 GRAS 4.8e-133 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01883 K14494 - gmx:547718 870.922